Genome Informatics 1997 Genome Informatics 1997 Published as: Miyano, S. and Takagi, T. (eds.); "Genome Informatics 1997" Universal Academy Press, Tokyo, 1997.
Preface by Satoru Miyano
[GIW97F01] Kiyoshi Asai, Yutaka Ueno, Katunobu Itou, Tetsushi Yada; "Automatic Gene Recognition without Using Training Data" [pdf]
[GIW97F02] "Mathieu Blanchette, Guillaume Bourque, David Sankoff; Breakpoint Phylogenies" [pdf]
[GIW97F03] Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak, Wojciech; T. Markiewicz, Jan Weglarz "Sequencing by Hybridization with Positive Faults" [pdf]
[GIW97F04] Koichiro Doi, Hiroshi Imai; "Greedy Algorithms for Finding a Small Set of Primers Satisfying Cover Length Resolution Conditions in PCR Experiments" [pdf]
[GIW97F05] Yukiko Fujiwara, Minoru Asogawa, Kenta Nakai; "Prediction of Mitochondrial Targeting Signals Using Hidden Markov Model" [pdf]
[GIW97F06] Hideki Hirakawa, Satoru Kuhara; "Prediction of Hydrophobic Cores of Proteins Using Wavelet Analysis" [pdf]
[GIW97F07] Hiroshi Inayoshi, Hitoshi Iba; "Rhythms Emerge in a Collection of `Blind' Chemicals by the Use of `Genetic Switches'" [pdf]
[GIW97F08] Jeffrey M. Koshi, David P. Mindell, Richard A. Goldstein; "Beyond Mutation Matrices: Physical-Chemistry Based Evolutionary Models" [pdf]
[GIW97F09] Antje Krause, Martin Vingron; "A New Method for Database Searching and Clustering" [pdf]
[GIW97F10] Nobutaka Mitsuhashi, Haretsugu Hishigaki, Toshihisa Takagi; "Applying an Association Rule Discovery Algorithm to Multipoint Linkage Analysis" [pdf]
[GIW97F11] Pedro Romero, Zoran Obradovic, A. Keith Dunker; "Sequence Data Analysis for Long Disordered Regions Prediction in the Calcineurin Family" [pdf]
[GIW97F12] Sivasundaram Suharnan, Takesi Itou, Hideo Matsuda, Hirotada Mori; "Clustering Molecular Sequences with Their Components" [pdf]
[GIW97F13] Katsutoshi Takahashi, Masayuki Nakazawa, Yasuo Watanabe; "DNAinsight: An Image Processing System for 2-D Gel Electrophoresis of Genomic DNA" [pdf]
[GIW97F14] Masaru Tomita, Kenta Hashimoto, Kouichi Takahashi, Tom Shimizu, Yuri Matsuzaki, Fumihiko Miyoshi, Kanako Saito, Sakura Tanida, Katsuyuki Yugi, J. Craig Venter, Clyde A. Hutchison; "E-CELL: Software Environment for Whole Cell Simulation " [pdf]
[GIW97F15] Laurence Vignal, Frederique Lisacek; "A Multi-Agent System for Exon Prediction in Human Sequences" [pdf]
[GIW97S01] Frederic Achard, Emmanuel Barillot; "Virgil: A Databank of Links between GDB and GenBank" [pdf]
[GIW97S02] Tatsuya Akutsu; "DP Algorithms for RNA Secondary Structure Prediction with Pseudoknots" [pdf]
[GIW97S03] Tatsuya Akutsu; "NP-Hardness Results for Protein Side-Chain Packing" [pdf]
[GIW97S04] Winston Hide, John Burke, Alan Christoffels, Robert Miller; "A Novel Approach Towards a Comprehensive Consensus Representation of the Expressed Human Genome" [pdf]
[GIW97S05] Makoto Hirosawa, Katumi Isono; "GeneMark-RC, a Recursive Procedure for Gene Identification in the Genomic Sequence Data with Self-Consistency Evaluation; Its Application to the Analysis of Several Prokaryotic Genomes" [pdf]
[GIW97S06] Andreas M. Kogelnik, Shamkant B. Navathe, Douglas C. Wallace; "GENOME: A Networked Database Environment for Human Genome Data" [pdf]
[GIW97S07] Eric Rivals, Max Dauchet, Jean-Paul Delahaye, Olivier Delgrange; "Fast Discerning Repeats in DNA Sequences with a Compression Algorithm" [pdf]
[GIW97S08] Kiyotaka Shiba, Hiromi Motegi, Tetsuo Noda; "Reading Evolutionary History of Aminoacyl-tRNA Synthetases from Genome Sequences" [pdf]
[GIW97D01] Jianghong An, Takao Nakama, Yasushi Kubota, Akinori Sarai; "3DinSight: An Integrated Database and Search Tool for Structure, Function and Property of Biomolecules" [pdf]
[GIW97D02] Kousuke Goto, Hikaru Yamamoto, Takuro Tamura, Toshitsugu Okayama, Tomohiro Koike, Satoru Miyazaki, Hirotada Mori, Takashi Gojobori, Hideaki Sugawara; "Visualization of Sequence and Biological Data in DNA Data Bank of Japan: Genome Information Broker and the Enhancement of SAKURA" [pdf]
[GIW97D03] Yasuhiko Kitamura, Tetsuya Nozaki, Shoji Tatsumi, Akira Tanigami; "Supporting Genome Information Processing by MetaCommander" [pdf]
[GIW97D04] Hiroshi Matsuno, Manabu Hori, Nobuaki Wada, Miyako Tanaka; "A Tool on Web for Gene Regulatory Networks: Toward Software Agent for Genome Information Analysis" [pdf]
[GIW97D05] Hiroshi Matsuno, Misako Ichimura, Tatsumi Fukuyama, Miyako Tanaka; "Implementing Mobile Agents in Genome Information Processing" [pdf]
[GIW97D06] Shinsei Minoshima, Susumu Mitsuyama, S. Ohno, T. Kawamura, Nobuyoshi Shimizu; "Mutation View: A Distributed Database for Human Disease Gene Mutations" [pdf]
[GIW97D07] Tadashi Mizunuma, Sadahiko Misu, Motonori Ota, Ken Nishikawa; "PDB Retriever: A Simple and Integrated Browser for Protein Data Bank" [pdf]
[GIW97D08] Kotoko Nakata, Takako Igarashi, Tsuguchika Kaminuma; "Integrated Receptor Database" [pdf]
[GIW97D09] Tadasu Shin-i, Yuji Kohara; "NEXTDB: The Expression Pattern Map Database for C.elegans" [pdf]
[GIW97D10] Takayuki Toda, Katsutoshi Takahashi, Masayuki Nakazawa, Yasuo Watanabe; "An Analysis System of 2-D Gel Electrophoresis Images for Genomic Scanning - DNAinsight -" [pdf]
[GIW97P01] Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano; "Identification of Gene Regulatory Networks by Strategic Gene Disruptions and Gene Overexpressions" [pdf]
[GIW97P02] Tatsuya Akutsu, Akira Ohyama, Kyotetsu Kanaya, Asao Fujiyama; "Development of a Spot Matching Module in Image Analysis System DDGEL for 2D Gel Electrophoresis" [pdf]
[GIW97P03] Tatsuya Akutsu, Hiroshi Tashimo; "Protein Threading Using a Score Function Derived by a Linear Programming Based Method" [pdf]
[GIW97P04] Hidemasa Bono, Susumu Goto, Hiroyuki Ogata, Minoru Kanehisa; "Genome Scale Prediction of Two-Component Signal Transducers from the Knowledge of Regulatory Interactions" [pdf]
[GIW97P05] Hiroki Fukasawa, Shigehiko Kanaya, Yoshihiro Kudo; "Detection of Intron, Exon, and Intergenic DNA in Human Genome on the Basis of Quantification Method II" [pdf]
[GIW97P06] Takamasa Futatsuki, Yuichi Kawanishi, Kimitoshi Naito, Satoru Miyazaki, Hideaki Sugawara; "Efficient Computation of Sequence Analysis in a Vector-Parallel Computer for the Study of Molecular Evolution" [pdf]
[GIW97P07] Osamu Gotoh; "Translated Codons (Trons) Useful for Direct Matching of a Genomic DNA Sequence and a Protein Sequence or Profile" [pdf]
[GIW97P08] Qian-Ping Gu, Kazuyuki Iwata, Shietung Peng, Qi-Ming Chen; "A Heuristic Algorithm for Genome Rearrangements" [pdf]
[GIW97P09] Hamahashi, Hiroaki Kitano; "Computer Simulation of Drosophila's Early Segmentation in Virtual Drosophila ProjectShugo" [pdf]
[GIW97P10] Yoshitomo Harada, Masato Wayama, Toshio Shimizu; "An Inspection of the Multiple Alignment Method with Use" [pdf]
[GIW97P11] Isamikawa, Katsutohi Takahashi, Masayuki Nakazawa, Yasuo Watanabe; "Automated Spot Matching in Autoradiogram Images of Two-Dimensional Electrophoresis of Genomic DNAJunichi" [pdf]
[GIW97P12] Masahiro Hattori, Minoru Kanehisa; "The Construction of the Knowledge Base on Apoptotic Molecular Interactions" [pdf]
[GIW97P13] Mika Hirakawa, Kensaku Imai, Hiroko Yamaguchi, Junko Shimada, Kazuo Takehana, Itaru Suzuki, Masahiko Suzuki, Fumihiko Kikuchi; "ALIS Sequencing Database for Large Scale Human Genome Project" [pdf]
[GIW97P14] Susumu Hiraoka; "Sequence Alignment with Motif Database" [pdf]
[GIW97P15] Makoto Hirosawa; "Prediction Rate of Coding Regions is Enhanced upto 99.15% by Joint Use of GeneMark-RC and GeneHacker in Case of a Cyanobacterium" [pdf]
[GIW97P16] Shouken Hokari, Koji Ohnishi; "Search for the Origins of Prokaryotic Cell-Division Genes" [pdf]
[GIW97P17] Ryotaro Irie, Naoko Kasahara, Susumu Hiraoka, Keiichi Nagai; "Codon-Sensitive Comparison of DNA Sequences Containing Insertions/Deletions and Statistical Significance of the Similarity Scores" [pdf]
[GIW97P18] Takashi Ishikawa, Shigeki Mitaku, Takao Terano, Yoko Kawata, Takatsugu Hirokawa; "Function Profile: Functional Sites of Proteins Discovered by Generalization of Amino Acid Sequences" [pdf]
[GIW97P19] Koji Kadota, Takatsugu Hirokawa, Shigeki Mitaku; "Position Dependent Amino Acid Propensity in the Transmembrane Region for Topology Prediction of Membrane Proteins" [pdf]
[GIW97P20] Masako Kaizawa, Tomoko Okazaki, Hiroshi Mizushima; "Establishment of Transcription Factor DataBase TFDB Maintenance System" [pdf]
[GIW97P21] Naoko Kasahara, Susumu Hiraoka, Ryotaro Irie, Keiichi Nagai; "Highly Sensitive Homology Search Methods on Parallel Computer" [pdf]
[GIW97P22] Hiroaki Kato, Yoshimasa Takahashi; "Automated Identification of Three-Dimensional Common Structural Features of Proteins" [pdf]
[GIW97P23] Shuichi Kawashima, Toshiaki Katayama, Minoru Kanehisa; "Construction of Molecular Interaction Database and Searching for Similar Pathways" [pdf]
[GIW97P24] Daisuke Kihara, Minoru Kanehisa; "Detection of Membrane Proteins in the Whole Genome Sequences" [pdf]
[GIW97P25] Koji Kyoda, Hirokaki Kitano; "Biology Foundation Class Library" [pdf]
[GIW97P26] Osamu Maruyama, Hirotaka Seki, Tomoyuki Uchida, Takayoshi Shoudai, Satoru Miyano; "Hypothesis Creator for Complete Genome" [pdf]
[GIW97P27] Mineo Morohashi, Hiroaki Kitano; "Computer Simulation of Gene Expression by Cell-Cell Interaction Involved in Development of Drosophila's Eye" [pdf]
[GIW97P28] Katsuhiko Murakami, Toshihisa Takagi; "Gene Recognition Using Multiple Gene-Finding Programs" [pdf]
[GIW97P29] Nobuyuki Nakajima, Masahiro Agu, Hido Akabane; "Some Common Statistical Features of Complete DNA Base Sequence" [pdf]
[GIW97P30] Tetsuo Nishikawa, Toshio Ota, Sumio Sugano, Asaf Salamov, Yoshitaka Nakamura, Tateo Nagai, Atsushi Oogane, Yutaka Suzuki, Yuri Kawai, Shizuko Ishii, Kaoru Saito, Jun-ichi Yamamoto, Takao Isogai; "Database and Analysis System of cDNA Sequences Obtained from Full-Length Enriched cDNA Library" [pdf]
[GIW97P31] Kouji Nishimura, Carlos Adriel Del Carpio; "MOLDEX: A Computer System for Drug Design 3) Constructing Hypothetical Ligand Molecules" [pdf]
[GIW97P32] Takaaki Nishioka, Susumu Goto, Minoru Kanehisa; "Present Status of LIGAND Chemical Database for Enzyme Reactions" [pdf]
[GIW97P33] Kiyoshi Noda, Satoshi Matsumoto, Ayumi Shinohara, Takayoshi Shoudai, Satoru Miyano; "Gene Finding Using HAKKE System" [pdf]
[GIW97P34] Atsushi Ogiwara, Naotake Ogasawara, Mari Watanabe, Toshihisa Takagi; "Comprehensive Sequence Analysis of B.subtilis Genome Using the BSORF Database" [pdf]
[GIW97P35] Koji Ohnishi, Hirokazu Tanaka, Hiroshi Yanagawa; "Origins of DNA-Binding Proteins and Their Kins: A View from Poly-tRNA Theory" [pdf]
[GIW97P36] Tomoko Okazaki, Kagehiko Kitano, Ikuo Uchiyama, Toshihisa Takagi; "p53MDB: p53 Mutation Database" [pdf]
[GIW97P37] Satoshi OOta, Naruya Saitou; "Reconstruction of Maximum Likelihood Phylogenetic Trees in Parallel Environment Using Logic Programming" [pdf]
[GIW97P38] Fengrong Ren, Hiroshi Tanaka; "Analysis of Virus Evolution Based on Inhomogeneous Markov Evolution Model" [pdf]
[GIW97P39] Jun-Ichi Sagara, Seishi Shimizu, Takeshi Kawabata, Shugo Nakamura, Mitsunori Ikeguchi, Kentaro Shimizu; "A Novel Method to Detect Identities in tRNA Genes Using Sequence Comparison" [pdf]
[GIW97P40] Rintaro Saito, Yuko Osada, Chiyo Yasui, Masaru Tomita; "Computer Analyses of Translation Initiation Sites in Complete Genomes" [pdf]
[GIW97P41] Kazushige Sato, Toyoko Katsurada, Yoshiko Kimura, Minoru Kanehisa; "Integrated GENES Database in KEGG" [pdf]
[GIW97P42] Kiminobu Sato, Toshio Shimizu; "A Method to Predict Transmembrane Helix Arrangements in Receptor Protein Analyzing Size-Compensated Substitution Pairs" [pdf]
[GIW97P43] Kenji Satou, Toshihide Ono, Yukiko Nakanishi, Emiko Furuichi, Satoru Kuhara, Toshihisa Takagi; "WebPACADE: A System for the Analysis of Structural Similarity of Protein via WWW" [pdf]
[GIW97P44] Yuichi Sugahara, Yoshihide Hayashizaki, Isao Tanihata; "An Automatic Image Analysis System for RLGS Films" [pdf]
[GIW97P45] Makiko Suwa, Asaf Saramov, Tetsuo Nishikawa, Mark Swindells; "GoodMotif: The System for Finding High Quality Motifs That Can Discriminate a Unique Protein Family" [pdf]
[GIW97P46] Kenji Suzuki, Minoru Kanehisa; "Database and Prediction of Sequence Motifs on Protein Molecular Interactions" [pdf]
[GIW97P47] Touru Suzuki, Ken'ichi Suwa, Hiroshi Yanagawa, Koji Ohnishi; "Origin of Ribonuclease P RNA (M1 RNA)" [pdf]
[GIW97P48] Fumi Takazawa, Minoru Kanehisa, Shigeki Mitaku; "Analysis of Amphiphilic Periodicity of alpha-Helices Detection of Edges of Helices and Functional Residues in Proteins" [pdf]
[GIW97P49] Nobuyuki Uchikoga, Akira Suyama; "Distribution of Significantly Repetitive Tuples Implying" [pdf]
[GIW97P50] Jean-Stephane Varre, Jean-Paul Delahaye, Eric Rivals; "The Transformation Distance" [pdf]
[GIW97P51] Yasuhiko Wada, Hiroshi Yasue; "Assistant Software for Linkage Analysis" [pdf]
[GIW97P52] Takanori Washio, Junji Sasayama, Takuya Sakaguchi, Masaru Tomita; "Computer Analysis of Hairpins at Transcription Termination Sites in Procayote Genomes" [pdf]
[GIW97P53] Tetsushi Yada, Yasushi Totoki, Kenta Nakai; "Motif Analysis of Yeast Transcriptional Regulatory Regions" [pdf]
[GIW97P54] Tetushiko Yoshida, Nobuaki Obata, Kenji Oosawa; "A New Method for Analysis of DNA and Protein Sequences by 2D-Pattern Formation with Coloration" [pdf]
[GIW97P55] Charlene Son; "Integration and Analysis of Biological Data" [pdf]
[GIW97I01] Vlado Dancik, Michael S. Waterman; "Simple Maximum Likelihood Methods for the Optical Mapping Problem" [pdf]
[GIW97I02] Piotr P. Slonimski; "The First Laws of Genomics"
[GIW97I03] Jerome Chailloux; "Invited Talk" [pdf]
[GIW97I04] Antoine Danchin, Alain Henaut; "The Map of the Cell is in the Chromosome" [pdf]