Kiyoshi Asai, Yutaka Ueno, Katunobu Itou, Tetsushi Yada; "Automatic Gene Recognition without Using Training Data" Genome Informatics 8, 15-24 (1997) [GIW97F01]
Mathieu Blanchette, Guillaume Bourque, David Sankoff; "Breakpoint Phylogenies" Genome Informatics 8, 25-34 (1997) [GIW97F02]
Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak, Wojciech; T. Markiewicz, Jan Weglarz "Sequencing by Hybridization with Positive Faults" Genome Informatics 8, 35-42 (1997) [GIW97F03]
Koichiro Doi, Hiroshi Imai; "Greedy Algorithms for Finding a Small Set of Primers Satisfying Cover Length Resolution Conditions in PCR Experiments" Genome Informatics 8, 43-52 (1997) [GIW97F04]
Yukiko Fujiwara, Minoru Asogawa, Kenta Nakai; "Prediction of Mitochondrial Targeting Signals Using Hidden Markov Model" Genome Informatics 8, 53-60 (1997) [GIW97F05]
Hideki Hirakawa, Satoru Kuhara; "Prediction of Hydrophobic Cores of Proteins Using Wavelet Analysis" Genome Informatics 8, 61-70 (1997) [GIW97F06]
Hiroshi Inayoshi, Hitoshi Iba; "Rhythms Emerge in a Collection of `Blind' Chemicals by the Use of `Genetic Switches'" Genome Informatics 8, 71-79 (1997) [GIW97F07]
Jeffrey M. Koshi, David P. Mindell, Richard A. Goldstein; "Beyond Mutation Matrices: Physical-Chemistry Based Evolutionary Models" Genome Informatics 8, 80-89 (1997) [GIW97F08]
Antje Krause, Martin Vingron; "A New Method for Database Searching and Clustering" Genome Informatics 8, 90-99 (1997) [GIW97F09]
Nobutaka Mitsuhashi, Haretsugu Hishigaki, Toshihisa Takagi; "Applying an Association Rule Discovery Algorithm to Multipoint Linkage Analysis" Genome Informatics 8, 100-109 (1997) [GIW97F10]
Pedro Romero, Zoran Obradovic, A. Keith Dunker; "Sequence Data Analysis for Long Disordered Regions Prediction in the Calcineurin Family" Genome Informatics 8, 110-124 (1997) [GIW97F11]
Sivasundaram Suharnan, Takesi Itou, Hideo Matsuda, Hirotada Mori; "Clustering Molecular Sequences with Their Components" Genome Informatics 8, 125-134 (1997) [GIW97F12]
Katsutoshi Takahashi, Masayuki Nakazawa, Yasuo Watanabe; "DNAinsight: An Image Processing System for 2-D Gel Electrophoresis of Genomic DNA" Genome Informatics 8, 135-146 (1997) [GIW97F13]
Masaru Tomita, Kenta Hashimoto, Kouichi Takahashi, Tom Shimizu, Yuri Matsuzaki, Fumihiko Miyoshi, Kanako Saito, Sakura Tanida, Katsuyuki Yugi, J. Craig Venter, Clyde A. Hutchison; "E-CELL: Software Environment for Whole Cell Simulation " Genome Informatics 8, 147-155 (1997) [GIW97F14]
Laurence Vignal, Frederique Lisacek; "A Multi-Agent System for Exon Prediction in Human Sequences" Genome Informatics 8, 156-165 (1997) [GIW97F15]
Frederic Achard, Emmanuel Barillot; "Virgil: A Databank of Links between GDB and GenBank" Genome Informatics 8, 166-172 (1997) [GIW97S01]
Tatsuya Akutsu; "DP Algorithms for RNA Secondary Structure Prediction with Pseudoknots" Genome Informatics 8, 173-179 (1997) [GIW97S02]
Tatsuya Akutsu; "NP-Hardness Results for Protein Side-Chain Packing" Genome Informatics 8, 180-186 (1997) [GIW97S03]
Winston Hide, John Burke, Alan Christoffels, Robert Miller; "A Novel Approach Towards a Comprehensive Consensus Representation of the Expressed Human Genome" Genome Informatics 8, 187-196 (1997) [GIW97S04]
Makoto Hirosawa, Katumi Isono; "GeneMark-RC, a Recursive Procedure for Gene Identification in the Genomic Sequence Data with Self-Consistency Evaluation; Its Application to the Analysis of Several Prokaryotic Genomes" Genome Informatics 8, 197-206 (1997) [GIW97S05]
Andreas M. Kogelnik, Shamkant B. Navathe, Douglas C. Wallace; "GENOME: A Networked Database Environment for Human Genome Data" Genome Informatics 8, 207-214 (1997) [GIW97S06]
Eric Rivals, Max Dauchet, Jean-Paul Delahaye, Olivier Delgrange; "Fast Discerning Repeats in DNA Sequences with a Compression Algorithm" Genome Informatics 8, 215-226 (1997) [GIW97S07]
Kiyotaka Shiba, Hiromi Motegi, Tetsuo Noda; "Reading Evolutionary History of Aminoacyl-tRNA Synthetases from Genome Sequences" Genome Informatics 8, 227-233 (1997) [GIW97S08]
Jianghong An, Takao Nakama, Yasushi Kubota, Akinori Sarai; "3DinSight: An Integrated Database and Search Tool for Structure, Function and Property of Biomolecules" Genome Informatics 8, 234-235 (1997) [GIW97D01]
Kousuke Goto, Hikaru Yamamoto, Takuro Tamura, Toshitsugu Okayama, Tomohiro Koike, Satoru Miyazaki, Hirotada Mori, Takashi Gojobori, Hideaki Sugawara; "Visualization of Sequence and Biological Data in DNA Data Bank of Japan: Genome Information Broker and the Enhancement of SAKURA" Genome Informatics 8, 236-237 (1997) [GIW97D02]
Yasuhiko Kitamura, Tetsuya Nozaki, Shoji Tatsumi, Akira Tanigami; "Supporting Genome Information Processing by MetaCommander" Genome Informatics 8, 238-239 (1997) [GIW97D03]
Hiroshi Matsuno, Manabu Hori, Nobuaki Wada, Miyako Tanaka; "A Tool on Web for Gene Regulatory Networks: Toward Software Agent for Genome Information Analysis" Genome Informatics 8, 240-241 (1997) [GIW97D04]
Hiroshi Matsuno, Misako Ichimura, Tatsumi Fukuyama, Miyako Tanaka; "Implementing Mobile Agents in Genome Information Processing" Genome Informatics 8, 242-243 (1997) [GIW97D05]
Shinsei Minoshima, Susumu Mitsuyama, S. Ohno, T. Kawamura, Nobuyoshi Shimizu; "Mutation View: A Distributed Database for Human Disease Gene Mutations" Genome Informatics 8, 244-245 (1997) [GIW97D06]
Tadashi Mizunuma, Sadahiko Misu, Motonori Ota, Ken Nishikawa; "PDB Retriever: A Simple and Integrated Browser for Protein Data Bank" Genome Informatics 8, 246-247 (1997) [GIW97D07]
Kotoko Nakata, Takako Igarashi, Tsuguchika Kaminuma; "Integrated Receptor Database" Genome Informatics 8, 248-249 (1997) [GIW97D08]
Tadasu Shin-i, Yuji Kohara; "NEXTDB: The Expression Pattern Map Database for C.elegans" Genome Informatics 8, 250-251 (1997) [GIW97D09]
Takayuki Toda, Katsutoshi Takahashi, Masayuki Nakazawa, Yasuo Watanabe; "An Analysis System of 2-D Gel Electrophoresis Images for Genomic Scanning - DNAinsight -" Genome Informatics 8, 252-253 (1997) [GIW97D10]
Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano; "Identification of Gene Regulatory Networks by Strategic Gene Disruptions and Gene Overexpressions" Genome Informatics 8, 254-255 (1997) [GIW97P01]
Tatsuya Akutsu, Akira Ohyama, Kyotetsu Kanaya, Asao Fujiyama; "Development of a Spot Matching Module in Image Analysis System DDGEL for 2D Gel Electrophoresis" Genome Informatics 8, 256-257 (1997) [GIW97P02]
Tatsuya Akutsu, Hiroshi Tashimo; "Protein Threading Using a Score Function Derived by a Linear Programming Based Method" Genome Informatics 8, 258-259 (1997) [GIW97P03]
Hidemasa Bono, Susumu Goto, Hiroyuki Ogata, Minoru Kanehisa; "Genome Scale Prediction of Two-Component Signal Transducers from the Knowledge of Regulatory Interactions" Genome Informatics 8, 260-261 (1997) [GIW97P04]
Hiroki Fukasawa, Shigehiko Kanaya, Yoshihiro Kudo; "Detection of Intron, Exon, and Intergenic DNA in Human Genome on the Basis of Quantification Method II" Genome Informatics 8, 262-263 (1997) [GIW97P05]
Takamasa Futatsuki, Yuichi Kawanishi, Kimitoshi Naito, Satoru Miyazaki, Hideaki Sugawara; "Efficient Computation of Sequence Analysis in a Vector-Parallel Computer for the Study of Molecular Evolution" Genome Informatics 8, 264-265 (1997) [GIW97P06]
Osamu Gotoh; "Translated Codons (Trons) Useful for Direct Matching of a Genomic DNA Sequence and a Protein Sequence or Profile" Genome Informatics 8, 266-267 (1997) [GIW97P07]
Qian-Ping Gu, Kazuyuki Iwata, Shietung Peng, Qi-Ming Chen; "A Heuristic Algorithm for Genome Rearrangements" Genome Informatics 8, 268-269 (1997) [GIW97P08]
Hamahashi, Hiroaki Kitano; "Computer Simulation of Drosophila's Early Segmentation in Virtual Drosophila ProjectShugo" Genome Informatics 8, 270-271 (1997) [GIW97P09]
Yoshitomo Harada, Masato Wayama, Toshio Shimizu; "An Inspection of the Multiple Alignment Method with Use" Genome Informatics 8, 272-273 (1997) [GIW97P10]
Junichi Isamikawa, Katsutohi Takahashi, Masayuki Nakazawa, Yasuo Watanabe; "Automated Spot Matching in Autoradiogram Images of Two-Dimensional Electrophoresis of Genomic DNAJunichi" Genome Informatics 8, 274-275 (1997) [GIW97P11]
Masahiro Hattori, Minoru Kanehisa; "The Construction of the Knowledge Base on Apoptotic Molecular Interactions" Genome Informatics 8, 276-277 (1997) [GIW97P12]
Mika Hirakawa, Kensaku Imai, Hiroko Yamaguchi, Junko Shimada, Kazuo Takehana, Itaru Suzuki, Masahiko Suzuki, Fumihiko Kikuchi; "ALIS Sequencing Database for Large Scale Human Genome Project" Genome Informatics 8, 278-279 (1997) [GIW97P13]
Susumu Hiraoka; "Sequence Alignment with Motif Database" Genome Informatics 8, 280-281 (1997) [GIW97P14]
Makoto Hirosawa; "Prediction Rate of Coding Regions is Enhanced upto 99.15% by Joint Use of GeneMark-RC and GeneHacker in Case of a Cyanobacterium" Genome Informatics 8, 282-283 (1997) [GIW97P15]
Shouken Hokari, Koji Ohnishi; "Search for the Origins of Prokaryotic Cell-Division Genes" Genome Informatics 8, 284-285 (1997) [GIW97P16]
Ryotaro Irie, Naoko Kasahara, Susumu Hiraoka, Keiichi Nagai; "Codon-Sensitive Comparison of DNA Sequences Containing Insertions/Deletions and Statistical Significance of the Similarity Scores" Genome Informatics 8, 286-287 (1997) [GIW97P17]
Takashi Ishikawa, Shigeki Mitaku, Takao Terano, Yoko Kawata, Takatsugu Hirokawa; "Function Profile: Functional Sites of Proteins Discovered by Generalization of Amino Acid Sequences" Genome Informatics 8, 288-289 (1997) [GIW97P18]
Koji Kadota, Takatsugu Hirokawa, Shigeki Mitaku; "Position Dependent Amino Acid Propensity in the Transmembrane Region for Topology Prediction of Membrane Proteins" Genome Informatics 8, 290-291 (1997) [GIW97P19]
Masako Kaizawa, Tomoko Okazaki, Hiroshi Mizushima; "Establishment of Transcription Factor DataBase TFDB Maintenance System" Genome Informatics 8, 292-293 (1997) [GIW97P20]
Naoko Kasahara, Susumu Hiraoka, Ryotaro Irie, Keiichi Nagai; "Highly Sensitive Homology Search Methods on Parallel Computer" Genome Informatics 8, 294-295 (1997) [GIW97P21]
Hiroaki Kato, Yoshimasa Takahashi; "Automated Identification of Three-Dimensional Common Structural Features of Proteins" Genome Informatics 8, 296-297 (1997) [GIW97P22]
Shuichi Kawashima, Toshiaki Katayama, Minoru Kanehisa; "Construction of Molecular Interaction Database and Searching for Similar Pathways" Genome Informatics 8, 298-299 (1997) [GIW97P23]
Daisuke Kihara, Minoru Kanehisa; "Detection of Membrane Proteins in the Whole Genome Sequences" Genome Informatics 8, 300-301 (1997) [GIW97P24]
Koji Kyoda, Hirokaki Kitano; "Biology Foundation Class Library" Genome Informatics 8, 302-303 (1997) [GIW97P25]
Osamu Maruyama, Hirotaka Seki, Tomoyuki Uchida, Takayoshi Shoudai, Satoru Miyano; "Hypothesis Creator for Complete Genome" Genome Informatics 8, 304-305 (1997) [GIW97P26]
Mineo Morohashi, Hiroaki Kitano; "Computer Simulation of Gene Expression by Cell-Cell Interaction Involved in Development of Drosophila's Eye" Genome Informatics 8, 306-307 (1997) [GIW97P27]
Katsuhiko Murakami, Toshihisa Takagi; "Gene Recognition Using Multiple Gene-Finding Programs" Genome Informatics 8, 308-309 (1997) [GIW97P28]
Nobuyuki Nakajima, Masahiro Agu, Hido Akabane; "Some Common Statistical Features of Complete DNA Base Sequence" Genome Informatics 8, 310-311 (1997) [GIW97P29]
Tetsuo Nishikawa, Toshio Ota, Sumio Sugano, Asaf Salamov, Yoshitaka Nakamura, Tateo Nagai, Atsushi Oogane, Yutaka Suzuki, Yuri Kawai, Shizuko Ishii, Kaoru Saito, Jun-ichi Yamamoto, Takao Isogai; "Database and Analysis System of cDNA Sequences Obtained from Full-Length Enriched cDNA Library" Genome Informatics 8, 312-313 (1997) [GIW97P30]
Kouji Nishimura, Carlos Adriel Del Carpio; "MOLDEX: A Computer System for Drug Design 3) Constructing Hypothetical Ligand Molecules" Genome Informatics 8, 314-315 (1997) [GIW97P31]
Takaaki Nishioka, Susumu Goto, Minoru Kanehisa; "Present Status of LIGAND Chemical Database for Enzyme Reactions" Genome Informatics 8, 316-317 (1997) [GIW97P32]
Kiyoshi Noda, Satoshi Matsumoto, Ayumi Shinohara, Takayoshi Shoudai, Satoru Miyano; "Gene Finding Using HAKKE System" Genome Informatics 8, 318-319 (1997) [GIW97P33]
Atsushi Ogiwara, Naotake Ogasawara, Mari Watanabe, Toshihisa Takagi; "Comprehensive Sequence Analysis of B.subtilis Genome Using the BSORF Database" Genome Informatics 8, 320-321 (1997) [GIW97P34]
Koji Ohnishi, Hirokazu Tanaka, Hiroshi Yanagawa; "Origins of DNA-Binding Proteins and Their Kins: A View from Poly-tRNA Theory" Genome Informatics 8, 322-323 (1997) [GIW97P35]
Tomoko Okazaki, Kagehiko Kitano, Ikuo Uchiyama, Toshihisa Takagi; "p53MDB: p53 Mutation Database" Genome Informatics 8, 324-325 (1997) [GIW97P36]
Satoshi OOta, Naruya Saitou; "Reconstruction of Maximum Likelihood Phylogenetic Trees in Parallel Environment Using Logic Programming" Genome Informatics 8, 326-327 (1997) [GIW97P37]
Fengrong Ren, Hiroshi Tanaka; "Analysis of Virus Evolution Based on Inhomogeneous Markov Evolution Model" Genome Informatics 8, 328-329 (1997) [GIW97P38]
Jun-Ichi Sagara, Seishi Shimizu, Takeshi Kawabata, Shugo Nakamura, Mitsunori Ikeguchi, Kentaro Shimizu; "A Novel Method to Detect Identities in tRNA Genes Using Sequence Comparison" Genome Informatics 8, 330-331 (1997) [GIW97P39]
Rintaro Saito, Yuko Osada, Chiyo Yasui, Masaru Tomita; "Computer Analyses of Translation Initiation Sites in Complete Genomes" Genome Informatics 8, 332-333 (1997) [GIW97P40]
Kazushige Sato, Toyoko Katsurada, Yoshiko Kimura, Minoru Kanehisa; "Integrated GENES Database in KEGG" Genome Informatics 8, 334-335 (1997) [GIW97P41]
Kiminobu Sato, Toshio Shimizu; "A Method to Predict Transmembrane Helix Arrangements in Receptor Protein Analyzing Size-Compensated Substitution Pairs" Genome Informatics 8, 336-337 (1997) [GIW97P42]
Kenji Satou, Toshihide Ono, Yukiko Nakanishi, Emiko Furuichi, Satoru Kuhara, Toshihisa Takagi; "WebPACADE: A System for the Analysis of Structural Similarity of Protein via WWW" Genome Informatics 8, 338-339 (1997) [GIW97P43]
Yuichi Sugahara, Yoshihide Hayashizaki, Isao Tanihata; "An Automatic Image Analysis System for RLGS Films" Genome Informatics 8, 340-341 (1997) [GIW97P44]
Makiko Suwa, Asaf Saramov, Tetsuo Nishikawa, Mark Swindells; "GoodMotif: The System for Finding High Quality Motifs That Can Discriminate a Unique Protein Family" Genome Informatics 8, 342-343 (1997) [GIW97P45]
Kenji Suzuki, Minoru Kanehisa; "Database and Prediction of Sequence Motifs on Protein Molecular Interactions" Genome Informatics 8, 344-345 (1997) [GIW97P46]
Touru Suzuki, Ken'ichi Suwa, Hiroshi Yanagawa, Koji Ohnishi; "Origin of Ribonuclease P RNA (M1 RNA)" Genome Informatics 8, 346-347 (1997) [GIW97P47]
Fumi Takazawa, Minoru Kanehisa, Shigeki Mitaku; "Analysis of Amphiphilic Periodicity of alpha-Helices Detection of Edges of Helices and Functional Residues in Proteins" Genome Informatics 8, 348-349 (1997) [GIW97P48]
Nobuyuki Uchikoga, Akira Suyama; "Distribution of Significantly Repetitive Tuples Implying" Genome Informatics 8, 350-351 (1997) [GIW97P49]
Jean-Stephane Varre, Jean-Paul Delahaye, Eric Rivals; "The Transformation Distance" Genome Informatics 8, 352-353 (1997) [GIW97P50]
Yasuhiko Wada, Hiroshi Yasue; "Assistant Software for Linkage Analysis" Genome Informatics 8, 354-355 (1997) [GIW97P51]
Takanori Washio, Junji Sasayama, Takuya Sakaguchi, Masaru Tomita; "Computer Analysis of Hairpins at Transcription Termination Sites in Procayote Genomes" Genome Informatics 8, 356-357 (1997) [GIW97P52]
Tetsushi Yada, Yasushi Totoki, Kenta Nakai; "Motif Analysis of Yeast Transcriptional Regulatory Regions" Genome Informatics 8, 358-359 (1997) [GIW97P53]
Tetushiko Yoshida, Nobuaki Obata, Kenji Oosawa; "A New Method for Analysis of DNA and Protein Sequences by 2D-Pattern Formation with Coloration" Genome Informatics 8, 360-361 (1997) [GIW97P54]
Charlene Son; "Integration and Analysis of Biological Data" Genome Informatics 8, 362 (1997) [GIW97P55]
Vlado Dancik, Michael S. Waterman; "Simple Maximum Likelihood Methods for the Optical Mapping Problem" Genome Informatics 8, 1-8 (1997) [GIW97I01]
Piotr P. Slonimski; "The First Laws of Genomics" Genome Informatics 8, 9-10 (1997) [GIW97I02]
Jerome Chailloux; "Invited Talk" Genome Informatics 8, 11 (1997) [GIW97I03]
Antoine Danchin, Alain Henaut; "The Map of the Cell is in the Chromosome" Genome Informatics 8, 13-14 (1997) [GIW97I04]