Published as: Mitaku, S., Goto, O., Konagaya, A. and Yonezawa, A. (eds.); "Proceedings of Genome Informatics Workshop II" (In Japanese)
Patrick Winston: "The Marriage of Artificial Intelligence and Molecular Biology: More Progress through Mutual Love and Cooperation"
Setsuo Ohsuga: "Artificial Intelligence ---State of the Art and Its Application"
Kenichi Matsubara: "Human Genome Analysis and Informatics"
David J. Lipman: "Preparing for Serendipity: Sharing Information in the New Biology"
Atsushi Ogiwara, Minoru Kanehisa: "Wide-area Network 'GenomeNet' and Distributed Genetic Information Processing"
Akira Suyama, Hiroaki Kaku, Ichiro Higuchi: "gsh(Genomic Shell) Extensible and Flexible UNIX Environment for Genomic Information Analysis
Takeshi Shinohara, Setsuo Arikawa, Satoru Kuhara, Tetsuhiro Miyahara, Hitoshi Inoue, Ayumi Shinohara, Tomoyuki Uchida: "A Text Database Management System SIGMA and Its Applications to Analyzing Genetic Information"
Yoshio Noguchi: "Utilization of a Sorter of Profile-Type for Human Genome Analysis"
Takashi Kunisawa, Masahiko Nakamura: "Identification of DNA Sequence Motifs in Escherichia coli Genome"
Hirohumi Doi: "Cyclic Set-Based Analytic Technique to Find Specific Origomers Which Characterize a Region in Genome: Application to Hypervariable Regions of HIV-1 Genome"
Norihiro Sakamoto, Toshihisa Takagi, Kenji Satou, Yoshiyuki Sakaki: "Development of Overlapping Oligonucleotide Database and Its Application to Searching Signal Sequences over Human Genome"
Christophe Lefevre, Joh-E Ikeda: "Pattern Landscapes over DNA sequence(s). Lexical Analysis of DNA Sequence Composition: a Computational Method and Application to "Consensus" Pattern Search in Multiple Sequences"
James B.Cole: "Statistical Mechanical and Theromdynamic Approaches to Extracting Patterns from Large and Complex Data Sets"
Y. Seto, M. Isoyama, Y. Ikeuti, K. Nishikawa, Y. Kawakita, M. Kanehisa; "Fragment Peptide Library (FRAP) and Analysis of Motifs"
Atsushi Ogiwara, Ikuo Uchiyama, Minoru Kanehisa: "Automatic Construcution of a Dictionary of Sequence Motifs that Characterize Groups of Similar Proteins"
Setsuo Arikawa, Satoru Kuhara, Satoru Miyano, Ayumi Shinohara, Takeshi Shinohara: "Machine Discovery of a Negative Motif"
Akihiko Konagaya: "Stochastic Motif: Current Status and Issues"
Satoshi Oyanagi, Koichi Yamagishi, Akihiko Konagaya: "Protein Motif Extraction on Multi PSI"
Yasuo Ina, Takashi Gojobori: "ODEN - A Computer System for Molecular Evolutionary Analysis and Database Search of DNA and Amino Acid Sequences"
Akio Nishikawa, Norihiro Sakamoto, Yoshiyuki Sakaki, Toshihisa Takagi, Kazuo Ushijima: "Classification of GenBank Genomic Data"
Koji Tajima: "Character Representation of Phylogenetic Trees for Biomolecular Sequences"
Shinsei Minoshima, Hiroshi Dohi, Mitsuru Ishizuka, Nobuyoshi Shimizu: "Construction of Human Gene Mapping Library System on X-window"
Yuzuru Husimi: "Towards An Analysis of Mutants Spectra on the Sequence Space I. Some Visual Representations".
Youhei Fujitani, Kenji Yamamoto: "On the Statistical Stability of the Nucleic Acids Molecule for the Small Changes in the Sequence"
Erik A. Cerven: "A Quantitative Theory of the Cell Proliferation and a BASIC Program Accommodating the Cell Cycle"
Yoichi Iida, Masatoshi Uchida; "Quantification Analysis and Backward Elimination of 5'-Splice Signals of mRNA Precursors. Relative Importance of Nucleotide Positions"
N.A. Kolchanov, I.B. Rogozin, A.E. Kel, M.P. Ponomarenko, J. Lihachov, L. Milanesi: "Computer Analysis and Recognition of Human Splice Sites"
Toshimichi Ikemura, Ken-ichi Matsumoto, Fumie Ishibashi, Yoshiko Wada, Ken-nosuke Wada: "Codon-Database and Intron-Database; Discriminant Analysis to Assign Protein-Coding Regions Using the Databases"
Masato Ishikawa, Tomoyuki Toya, Masaki Hoshida, Katsumi Nitta, Atushi Ogiwara, Minoru Kanehisa: "Multiple Alignment by Parallel Simulated Annealing"
N. Alexandrov, N. Go: "Local Multiple Alignment by Consensus Matrix"
Makoto Hirosawa, Masaki Hoshida, Masato Ishikawa, Tomoyuki Toya: "Multiple Alignment System for Protein Sequences Employing 3-Dimensional Dynamic Programming"
Yutaka Akiyama: "A Quick Algorithm for RNA Secondary Structure Prediction Using A Hopfield Neural Network"
Eiji Arakawa, Hiroshi Yoshikura, Kenji Yamamoto: "On the mRNA Secondary Structure of Cytochrome P450 Gene Family"
Mikita Suyama, Atsushi Ogiwara, Takaaki Nishioka, Jun'ichi Oda: "Construction and Application of Enzyme-Reaction Database"
M. Isoyama, Y. Ikeuti, Y. Seto: "Construction of Integrated Relational Database for Protein"
Fumiyoshi Sasagawa, Koji Tajima: "Prediction of Protein Secondary Structure by the Neural Network"
Kiyoshi Asai, Satoru Hayamizu, Kenichi Handa: "Genetic Information Processing by Stochastic Model ----HMM for Secondary Structure Prediction of Protein----"
Tosiyuki Noguti: "Description of Protein Structures in a Logic Programing Language"
Nickolai N. Alexandrov, Katsutoshi Takahashi, Nobuhiro Go: "Common Spatial Arrangements of Backbone Fragments in Proteins"
Yo Matsuo, Minoru Kanehisa: "An Approach to Systematic Detection of Protein Structural Motifs"
K. Tabuchi, T. Karasawa, J. Izumisawa, T. Yasukawa: "Prediction of the 3-Dimensional Structure of Proteins by Annealing Simulations"
Satoru Kuhara, Kenji Sato, Emiko Furuichi, Kyoko Takiguchi, Toshihisa Takagi: "A Deductive Database System PACADE for the Protein Structure Analysis"
Shigeki Mitaku, Nobuhiko Saito: "Computer System for Membrane Protein Structure Prediction (MEPSS)"