| Date |
July 10, 2006 |
| Speaker |
Dr. Ken Ichiro Fukuda, Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology |
| Title |
INOH database and annotation ontologies |
| Abstract |
INOH is a manually curated signal transduction pathway database
of mammals. As the curation is based on review articles, INOH has to
cope with many types of abstract or ambiguous expressions found in
the literature. To cope with them INOH has a hierarchical graph
structure annotated with a set of GO-like bio-ontologies. Every
biological process is annotated by the "Event Ontology" and physical
entity is annotated by the "MoleculeRole Ontology". For example,
the MoleculeRole ontology captures relations between generic molecule
names, concrete molecule names, sequence accession numbers and
complexes and their subunits. The ontologies and pathway data are
available at http://www.inoh.org.
|
|
アブストラクト