L. Zhang; On a Mirkin-Muchnik-Smith conjecture for comparing molecular phylogenies. Genome Informatics 7, 1-12 (1996). [GIW96O01]

Q.-P. Gu, S. Peng, and H. Sudborough; Approximation algorithms for genome rearrangements. Genome Informatics 7, 13-22 (1996). [GIW96O02]

Matsuda, H., Ishihara, T. and Hashimoto, A.; A clustering method for molecular sequences based on pairwise similarity. Genome Informatics 7, 23-32 (1996). [GIW96O03]

F. Shi and P. Widmayer; Approximate multiple strings searching by clustering. Genome Informatics 7, 33-40 (1996). [GIW96O04]

Shibuya, T. and Imai, H.; Parametric alignment of multiple biological sequences. Genome Informatics 7, 41-50 (1996). [GIW96O05]

Yamaguchi, M., Shimozono, S. and Shinohara, T.; Finding minimal multiple generalization over regular patterns with alphabet indexing. Genome Informatics 7, 51-60 (1996). [GIW96O06]

Kanaya, S., Kudo, Y., Suzuki, S. and Ikemura, T.; Systematization of species-specific diversity of genes in codon usage: Comparison of the diversity among bacteria and prediction of the protein production levels in cells. Genome Informatics 7, 61-71 (1996). [GIW96O07]

Nakai, K.; Refinement of the prediction methods of signal peptides for the genome analyses of Saccharomyces cerevisiae and Bacillus subtilis. Genome Informatics 7, 72-81 (1996). [GIW96O08]

M. S. Gelfand, T. V. Astakhova, and M. A. Roytberg; An algorithm for highly specific recognition of protein-coding regions. Genome Informatics 7, 82-87 (1996). [GIW96O09]

Asai, K., Yada, T. and Itou, K.; Finding genes by hidden Markov models with a protein motif dictionary. Genome Informatics 7, 88-97 (1996). [GIW96O10]

Furukawa, N., Matsumoto, S., Shinohara, A., Shoudai, T. and Miyano, S.; HAKKE: a multi-strategy prediction system for sequences. Genome Informatics 7, 98-107 (1996). [GIW96O11]

C. A. Del Carpio, and V. Gogonea; Modeling proteins conformation in solution. Part I; a parallel GA engine for protein conformational space mapping. Genome Informatics 7, 108-118 (1996). [GIW96O12]

N. N. Alexandrov, and V. V. Solovyev; Effect of secondary structure prediction on protein fold recognition and database search. Genome Informatics 7, 119-127 (1996). [GIW96O13]

Ogata, H., Bono, H., Fujibuchi, W., Goto, S. and Kanehisa, M.; Analysis of binary relations and hierarchies of enzymes in the metabolic pathways. Genome Informatics 7, 128-136 (1996). [GIW96O14]

Kitamura, Y., Nakanishi, H., Nozaki, T., Miura, T. and Ishida, T.; MetaViewer and MetaCommander: WWW tools for genome informatics. Genome Informatics 7, 137-146 (1996). [GIW96O15]

R. Gras, and J. Nicolas; FOREST, a browser for huge DNA sequences. Genome Informatics 7, 147-156 (1996). [GIW96O16]

Koike, T. et al.; Development of new DDBJ DNA sequence database with data annotation. Genome Informatics 7, 157-165 (1996). [GIW96O17]

Kitakami, H., Mori, Y. and Arikawa, M.; A taxonomy database system for managing multimedia contents. Genome Informatics 7, 166-167 (1996). [GIW96P01]

Kato, H. and Takahashi, Y.; Automated identification of three-dimensional motif in proteins. Genome Informatics 7, 168-169 (1996). [GIW96P02]

Kamei, T. and Yonezawa, Y.; Characterization of enzyme structure by informational complexity. Genome Informatics 7, 170-171 (1996). [GIW96P03]

Wada, Y. and Yasue, H.; Java version of animal genome database. Genome Informatics 7, 172-173 (1996). [GIW96P04]

Nakaya, A., Yonezawa, A. and Yamamoto, K.; A symbolic representation for RNA secondary structures; towards the construction of RNA secondary structures data base. Genome Informatics 7, 174-175 (1996). [GIW96P05]

Isokawa, M., Wayama, M. and Shimizu, T.; Multiple sequence alignment using a genetic algorithm. Genome Informatics 7, 176-177 (1996). [GIW96P06]

Ishikawa, T., Mitaku, S. and Terano, T.; Discovering functional sites of amino acid sequences using sorted variable generalization. Genome Informatics 7, 178-179 (1996). [GIW96P07]

Hirokawa, T., S. Boon-Chieng, and Mitaku, S.; Improvement of the transmembrane helix prediction system by three-stage model. Genome Informatics 7, 180-181 (1996). [GIW96P08]

Washio, T., Wada, M. and Tomita, M.; Sequence analysis of short tandem repeats in the genomes of H.influenzae and M.genitalium. Genome Informatics 7, 182-183 (1996). [GIW96P09]

Asakawa, Y. and Tomita, M.; On correlation between G+C contents and introns lengths; Longer introns tend to be more A+T rich. Genome Informatics 7, 184-185 (1996). [GIW96P10]

Shimizu, T., Takahashi, K. and Tomita, M.; CpG dinucleotide distribution and DNA methylation. Genome Informatics 7, 186-187 (1996). [GIW96P11]

Saito, R., Sasaki, H., Osada, Y. and Tomita, M.; Computer analyses of nucleotide patterns around start codons. Genome Informatics 7, 188-189 (1996). [GIW96P12]

Osada, Y., Matsushima, R. and Tomita, M.; Computer analyses of overlapping genes in Mycoplasma genitalium. Genome Informatics 7, 190-191 (1996). [GIW96P13]

Muraki, M. and Tomita, M.; Computer analyses of site-specific variabilities in human Alu sequences. Genome Informatics 7, 192-193 (1996). [GIW96P14]

Toda, Y. and Tomita, M.; Inferring history of genomic duplication using subclassified Alu elements. Genome Informatics 7, 194-195 (1996). [GIW96P15]

Fujiwara, Y. and Asogawa, M.; Motif extraction: Normalization of scores. Genome Informatics 7, 196-197 (1996). [GIW96P16]

Asogawa, M.; Beta-sheet prediction using inter-strand residue pairs and refinement with Hopfield neural network. Genome Informatics 7, 198-199 (1996). [GIW96P17]

Nakata, K., Hayakawa, M., Igarashi, T. and Kaminuma, T.; Building a receptor database. Genome Informatics 7, 200-201 (1996). [GIW96P18]

Kasahara, N., Hiraoka, S. and Nagai, K.; Direct comparison DNA and amino acid sequences based on a dynamic programming method. Genome Informatics 7, 202-203 (1996). [GIW96P19]

Yamamoto, H., Tamura, T., Isono, K., Gojobori, T., Sugawara, H., Nishikawa, K., Saitou, N., Imanishi, T., Fukami-Kobayashi, K., Ikeo, K. and Tateno, Y.; SAKURA: A new data submission system of DDBJ to meet users' needs in the age of mass production of DNA sequences. Genome Informatics 7, 204-205 (1996). [GIW96P20]

Inayoshi, H. and Iba, H.; Emergent rhythms in an artificial chemical world using 'genetic switches'. Genome Informatics 7, 206-207 (1996). [GIW96P21]

Ueno, Y. and Asai, K.; A new software for visualization of large proteins. Genome Informatics 7, 208-209 (1996). [GIW96P22]

Yada, T., Totoki, Y., Ishikawa, M. and Asai, K.; Automatic discovery of hidden Markov representations for functional sites within DNA sequences. Genome Informatics 7, 210-211 (1996). [GIW96P23]

Hirosawa, M. and Yada, T.; GeneHacker: Gene-finding program for the prediction of precise protein coding regions. Genome Informatics 7, 212-213 (1996). [GIW96P24]

Nakamura, Y., Miyajima, N., Hirosawa, M., Kaneko, T. and Tabata, S.; CyanoBase: The genome database for Synechocystis sp. strain PCC6803. Genome Informatics 7, 214-215 (1996). [GIW96P25]

Hirakawa, M., Imai, K., Ohyama, A. and Kikuchi, F.; Management system for sequencing data of human genome - as a part of ALIS -. Genome Informatics 7, 216-217 (1996). [GIW96P26]

Okazaki, T., Kaizawa, M. and Mizushima, H.; Establishment and management of transcription factor database TFDB. Genome Informatics 7, 218-219 (1996). [GIW96P27]

F. Lisacek, and N. El Mabrouk; Very fast identification of tRNA in genomic DNA. Genome Informatics 7, 220-221 (1996). [GIW96P28]

Hasegawa, A., Uemura, Y., Kobayashi, S. and Yokomori, T.; Predicting and learning RNA secondary structures. Genome Informatics 7, 222-223 (1996). [GIW96P29]

V. Gogonea, C. Baleanu-Gogonea, and C. A. Del Carpio; Modeling proteins conformation in solution. Part II: a solvent effect model based on the evaluation of solvent-accessible surface area and generalized Born equation. Genome Informatics 7, 224-225 (1996). [GIW96P30]

C. A. Del Carpio, V. Gogonea, Yamaguchi, K., Takei, M. and Nishimura, K.; Sense-antisense homology boxes in proteins: Structural motifs enconded in the DNA? . Genome Informatics 7, 226-227 (1996). [GIW96P31]

Ogiwara, A., Ogasawara, N., Watanabe, M. and Takagi, T.; Construction of the Bacillus subtilis ORF database BSORF DB. Genome Informatics 7, 228-229 (1996). [GIW96P32]

S. Sivasundaram, Takeda, J., Itoh, T., Takemoto, K., Watanabe, H., Matsuda, H. and Mori, H.; Clustering and evolutional analysis of E. coli proteins. Genome Informatics 7, 230-231 (1996). [GIW96P33]

Takahashi, T., Takahashi, K., Nakazawa, M. and Watanabe, Y.; High-speed genome scanning analysis based on automated detection and matching spots in autoradiogram images of 2-D gel electrophoresis. Genome Informatics 7, 232-233 (1996). [GIW96P34]

F. Ren, Tanaka, H. and Okayama, T.; The inference of model-based minimum complexity in reconstructing molecular phylogenetic tree. Genome Informatics 7, 234-235 (1996). [GIW96P35]

J. An, Nakama, T., Kubota, Y. and Sarai, A.; 3DInSight: An integrated relational database and search tool for molecular structures and functional sites. Genome Informatics 7, 236-237 (1996). [GIW96P36]

Ohnishi, K. and Yanagawa, H.; Poly-tRNA structure in the Bacilluis subtilis rrnB operon is a relic of an early peptide-synthesizing ribozyme co-ancestral to the E. coli trpE gene and the exon 2 of the chicken triose-phosphate isomerase gene. Genome Informatics 7, 238-239 (1996). [GIW96P37]

Minoshima, S., Mitsuyama, S. and Shimizu, N.; Mutation View: A network-transparent database system for mutations in the human disease genes. Genome Informatics 7, 240-241 (1996). [GIW96P38]

Uchikoga, N. and Suyama, A.; Vestiges of primordial words in base sequences of modern genomes. Genome Informatics 7, 242-243 (1996). [GIW96P39]

Kihara, D., Shimizu, T. and Kanehisa, M.; A prediction method for transmembrane segments in proteins utilizing multiple discrimination functions. Genome Informatics 7, 244-245 (1996). [GIW96P40]

Tomii, K. and Kanehisa, M.; A statistical analysis of gene arrangement patterns in bacterial and yeast genomes. Genome Informatics 7, 246-247 (1996). [GIW96P41]

Goto, S., Fukushima, N. and Kanehisa, M.; Standard Gibbs free energy changes of enzyme reactions in metabolic pathway computation. Genome Informatics 7, 248-249 (1996). [GIW96P42]

Fujibuchi, W., Goto, S. and Kanehisa, M.; Deductive calculation library for KEGG pathway simulation. Genome Informatics 7, 250-251 (1996). [GIW96P43]

Bono, H., Ogata, H., Goto, S. and Kanehisa, M.; Genome scale prediction of enzyme genes utilizing the knowledge of metabolic interactions. Genome Informatics 7, 252-253 (1996). [GIW96P44]

Sato, K., Katsurada, T., Kamiya, T., Egoshi, M. and Kanehisa, M.; Java applets for handling genome maps in KEGG. Genome Informatics 7, 254-255 (1996). [GIW96P45]

Murakami, K. and Takagi, T.; Finding coding region using secondary hexamer measure and two-dimensional linear discriminant analysis. Genome Informatics 7, 256-257 (1996). [GIW96P46]

Ohta, Y., Yamamoto, Y., Uchiyama, I. and Takagi, T.; Information finding from biological papers. Genome Informatics 7, 258-259 (1996). [GIW96P47]

Yamamoto, Y., Ohta, Y., Uchiyama, I. and Takagi, T.; Constructing a dictionary of biological terms for information extraction. Genome Informatics 7, 260-261 (1996). [GIW96P48]

Hishigaki, H., Kitano, K., Nakamura, Y., Maekawa, H. and Takagi, T.; A refinement system for large amount of cDNA data. Genome Informatics 7, 262-263 (1996). [GIW96P49]

Yamamura, Y., Tsukamoto, Y., Satou, K., Furuichi, E., Takagi, T. and Kuhara, S.; Automatic classification of protein structures with deductive database system. Genome Informatics 7, 264-265 (1996). [GIW96P50]

Mitsuhashi, N., Hishigaki, H. and Takagi, T.; Application of data mining to genetic linkage analysis. Genome Informatics 7, 266-267 (1996). [GIW96P51]

Inoue, K., Maruyama, O., Shoudai, T. and Miyano, S.; Mining binary diagram rules. Genome Informatics 7, 268-269 (1996). [GIW96P52]

Maruyama, O., Tateishi, E., Furuichi, E., Kuhara, S. and Miyano, S.; A PAC-learning algorithm for conformation rules and its experiments. Genome Informatics 7, 270-271 (1996). [GIW96P53]

Ohyama, A., Kanaya, K., Akutsu, T. and Fujiyama, A.; An image analysis system for two-dimensional gel electrophoresis. Genome Informatics 7, 272-273 (1996). [GIW96P54]

Kitada, H., Tono, K. Yamamoto, M., Mitamura, T., Ohuchi, A., Ohyanagi, T. and Matsushima, N.; Multiple alignment of biological sequences containing tandem repeat. Genome Informatics 7, 274-275 (1996). [GIW96P55]

M. Rani, and C. K. Mitra; Harmonic analysis of protein sequences. Genome Informatics 7, 276-277 (1996). [GIW96P56]