Genome Informatics 6 (1995)

Akutsu, T.; Protein structure alignment using a graph matching technique. Genome Informatics 6, 1-8 (1995). [GIW95O01]

Imai, H. and Ikeda T.; K-Group multiple alignment based on A* search. Genome Informatics 6, 9-18 (1995). [GIW95O02]

Matsuda, H.; Construction of phylogenetic trees from amino acid sequences using a genetic algorithm. Genome Informatics 6, 19-28 (1995). [GIW95O03]

Arita, M.; SIMFLY2: The simulation of a fly embryo. Genome Informatics 6, 29-38 (1995). [GIW95O04]

Ishikawa, T., Mitaku, S., Terano, T., Hirokawa, T., Suwa, M. and Seah Boon Ching.; Building a knowledge-base for protein function prediction using multistrategy learning. Genome Informatics 6, 39-48 (1995). [GIW95O05]

Igarashi, T., Nadaoka, Y. and Kamimura,T.; A data and knowledge base for cell signaling networks. Genome Informatics 6, 49-56 (1995). [GIW95O06]

Tsumoto, S., Tanaka, H., Tsumoto, K. and Kumagai, I.; Automated discovery of protein functional units from amino-acid sequences using rough-sets-based comparative analysis. Genome Informatics 6, 57-66 (1995). [GIW95O07]

Uemura, Y., Hasegawa, A., Kobayashi, S. and Yokomori, T.; Grammatically modeling and predicting RNA secondary structures. Genome Informatics 6, 67-76 (1995). [GIW95O08]

Fujiwara, Y., Asogawa, M. and Konagaya, A.; Hidden Markov model to extract leucine zipper motif. Genome Informatics 6, 77-85 (1995). [GIW95O09]

Kanaya, S., Kudo, Y., Nakamura, Y. and Ikemura, T.; Assessment of species-specific diversity of genes in codon usage. Genome Informatics 6, 86-87 (1995). [GIW95P01]

Kanaya, S., Kudo, Y., Nakamura, Y. and Ikemura, T.; Estimation of protein-production levels in Escherichia coli genes on the basis of multivariate diversity in codon usage. Genome Informatics 6, 88-89 (1995). [GIW95P02]

Kudo, Y. and Kanaya, S.; Consensus genic sequences in bacterial rRNA-tRNA gene clusters. Genome Informatics 6, 90-91 (1995). [GIW95P03]

Fengrong Ren, Tanaka, H. and Fukuda, N.; MDL method: an inductive inference method for reconstructing phylogenetic trees. Genome Informatics 6, 92-93 (1995). [GIW95P04]

Itoh, T., Yano, M., Takemoto, K., Kajihara, M. and Mori, H.; Clustering of all known and predicted open reading frames of Esherichia coli K12. Genome Informatics 6, 94-95 (1995). [GIW95P05]

Ogata, H., Fujibuchi, W. and Kanehisa, M.; Statistical features identified from comparison of homologous introns. Genome Informatics 6, 96-97 (1995). [GIW95P06]

Murakami, K., Tsukuni, S., Takagi, T. and Hattori, M.; Evaluation of exon prediction tools using a long DNA sequence data. Genome Informatics 6, 98-99 (1995). [GIW95P07]

Ogawa, Y., Nagashima, T. and Khawaja, S.; Comparison of statistical algolithms for predicting splice junctions in mRNA precursors of mammalian genes. Genome Informatics 6, 100-101 (1995). [GIW95P08]

Hirosawa, M., Kaneko, T. and Tabata, S.; CyanoBase: Visual presentation of information on the genome of cyanobacterium Synechocystis sp. strain PCC6803 through WWW. Genome Informatics 6, 102-103 (1995). [GIW95P09]

Nishikawa, T. and Nagai, K.; A large-scale GenBank search of expressed sequence tags using rapid identity searching program for DNA sequencs. Genome Informatics 6, 104-105 (1995). [GIW95P10]

Fujibuchi, W. and Kanehisa, M.; Prediction of promoter expression specificity by conserved sequence patterns. Genome Informatics 6, 106-107 (1995). [GIW95P11]

Shibayama, G., Satou, K. and Takagi, T.; Mining association rules from signals found in mammalian promoter sequences. Genome Informatics 6, 108-109 (1995). [GIW95P12]

Furukawa, N., Shoudai, T., Shinohara, A. and Miyano, S HAKKE: Automatic predictor generator for sequences. Genome Informatics 6, 110-111 (1995). [GIW95P13]

Mamitsuka, H.; Learning hidden Markov models using back-propagation through time. Genome Informatics 6, 112-113 (1995). [GIW95P14]

Paul Horton, Kenta Nakai, K.; A probabilistic inference system for the prediciton of subcellular localization sites of proteins: application to E. coli data. Genome Informatics 6, 114-115 (1995). [GIW95P15]

Uchiyama, I., Ogiwara, A., Takagi, T. and Kanehisa, M.; Protein sequence grouping by peptide word motifs. Genome Informatics 6, 116-117 (1995). [GIW95P16]

Lajos Baranyi, William Campbell, Okada, H.; Antisense homology boxes in proteins. Genome Informatics 6, 118-119 (1995). [GIW95P17]

Suzuki, K., Akiyama, Y. and Kanehisa, M.; Multiple sequence alignment by combining incomplete blocks of similar segments. Genome Informatics 6, 120-121 (1995). [GIW95P18]

Wayama, M., Takahashi, K. and Shimizu, T.; An approach to amino acid sequence alignment using a genetic algorithm. Genome Informatics 6, 122-123 (1995). [GIW95P19]

Osamu Gotoh, O.; Accuracy of multiple sequence alignments as assessed by reference to structural alignments. Genome Informatics 6, 124-125 (1995). [GIW95P20]

Kato, T., Taiji, M., Ebisuzaki, T. and Suyama, A.; Design of a hardware board for sequence alignment. Genome Informatics 6, 126-127 (1995). [GIW95P21]

Hirokawa, T., Suwa, M. and Mitaku, S.; Theoretical prediction of positioning, orientation and tilt angles of helices of a small membrane protein without structural template. Genome Informatics 6, 128-129 (1995). [GIW95P22]

Carlos A. Del Carpio, Sasaki, S., Lajos Baranyi, Okada, H.; A parallel hybrid GA for peptide 3-D structure prediction. Genome Informatics 6, 130-131 (1995). [GIW95P23]

Kato, H. and Takahashi, Y.; Three-dimensional motif search of proteins using abstract representation of secondary structure segment. Genome Informatics 6, 132-133 (1995). [GIW95P24]

Minoru Asogawa, M.; Beta-sheet prediction using inter-strand residue pair propensities. Genome Informatics 6, 134-135 (1995). [GIW95P25]

Fukushima, N. and Kanehisa, M.; A study of molecular recognition between DNA and metal ions. Genome Informatics 6, 136-137 (1995). [GIW95P26]

Nishioka, T., Suyama, M., Goto, S., Akiyama, Y. and Kanehisa, M.; LIGAND chemical database for enzymatic reactions: A link between enzyme structures and chemical reactions. Genome Informatics 6, 138-139 (1995). [GIW95P27]

Nakata, K., Hayakawa, M., Nakano, T. an Kamimura, T.; Receptor database representation. Genome Informatics 6, 140-141 (1995). [GIW95P28]

Tomii, K. and Kanehisa, M.; AAindex: A database of amino acid indices and mutation matrices. Genome Informatics 6, 142-143 (1995). [GIW95P29]

Ohyama, A., Akutsu, T. and Fujiyama, A.; Software tool for mapping human genome by chromosome-specific two-dimensional electrophoresis method. Genome Informatics 6, 144-145 (1995). [GIW95W01]

Minoshima, S., Mitsuyama, S., Kawasaki, K. and Shimizu, S.; GeneView, Locus-in and physical mapper: the GUI-softwares for genome mapping data management. Genome Informatics 6, 146-147 (1995). [GIW95W02]

Wada, Y., Inoue, K., Ohga, H. and Yasue, H.; gRanch: Gene mapping workbench. Genome Informatics 6, 148-149 (1995). [GIW95W03]

Zhongqing Wang, Ohyama, A. and Miyajima, N.; An integrated system for large-scale sequencing: Dr AGCT. Genome Informatics 6, 150-151 (1995). [GIW95W04]

Hiraoka, S. and Nagai, K.; DNA sequence comparison based on amino acid similarity. Genome Informatics 6, 152-153 (1995). [GIW95W05]

Seah Boon-Chieng and Shigeki Mitaku, S.; Prediction of transmembrane helical regions by three-stage model. Genome Informatics 6, 154-155 (1995). [GIW95W06]

Furukawa, N., Tateishi, E., Shoudai, T. and Miyano, S.; Experiments by BONSAI garden. Genome Informatics 6, 156-157 (1995). [GIW95W07]

Nobuo Tsukamoto, N. and Minoru Kanehisa, M.; A WWW tool for organizing knowledge of biomolecular reaction pathways. Genome Informatics 6, 158-159 (1995). [GIW95W08]

Tateishi, N., Shiotari, H., Kuhara, S., Takagi, T. and Kanehisa, M.; An integrated database SPAD (Signaling Pathway Database) for signal transduction and genetic information. Genome Informatics 6, 160-161 (1995). [GIW95W09]

Ogiwara, A., Takagi, T. and Ogasawara, N.; A WWW database of Bacillus Subtilis ORFs determined by the international project of sequencing B. Subtilis genome. Genome Informatics 6, 162-163 (1995). [GIW95W10]

Yasunaga, T., Takagi, T., Takeuchi, A. and Niiyama, T.; Developing sequence analysis tools on Web server. Genome Informatics 6, 164-165 (1995). [GIW95W11]

Yasukazu Nakamura, Y. and Toshimichi Ikemura, T.; FOP (Frequency of Optimal Codon usage): WWW service with its distribution analysis. Genome Informatics 6, 166-167 (1995). [GIW95W12]