Akutsu,T., Onizuka, K. and Ishikawa, M.; New hashing techniques for three-dimensional protein structures. Genome Informatics 5, 1-10 (1994). [GIW94O01]

Matsuo, Y. and Nishikawa, K.; Prediction of protein structural similarities using a 3D-1D compatibility method. Genome Informatics 5, 11-18 (1994). [GIW94O02]

Mamitsuka,H. and Abe, N.; Prediction of beta-sheet structures using stochastic tree grammars. Genome Informatics 5, 19-28 (1994). [GIW94O03]

Kobayashi, S. and Yokomori, T.; Modeling RNA secondary structures using tree grammars. Genome Informatics 5, 29-38 (1994). [GIW94O04]

Arimura, H., Fujino, R., Shinohara, T. and Arikawa, S.; Protein motif discovery from positive examples by minimal multiple generalization over regular patterns. Genome Informatics 5, 39-48 (1994). [GIW94O05]

Hugues Ripoche, Engelbert Mephu Nguifo, Jean Sallantin ; Indexing protein sequences with MINOS.. Genome Informatics 5, 49-58 (1994). [GIW94O06]

Tsumoto,S., Tanaka, H., Tsumoto, K. and Kumagai, I.; Comparative analysis of amino acid sequences based on rough sets and domain knowledge hierarchy. Genome Informatics 5, 59-69 (1994). [GIW94O07]

Hirosawa, M., Tanaka, R., Tanaka, H., Akahoshi, M. and Ishikawa, M.; Simulative representation of biological knowledge using object-oriented database language. Genome Informatics 5, 70-79 (1994). [GIW94O08]

Arita, M., Hagiya, M. and Shiratori, T.; GEISHA SYSTEM: an environment for simulating protein interaction. Genome Informatics 5, 80-89 (1994). [GIW94O09]

Ikeda, T. and Imai, H.; Fast A* algorithms for multiple sequence alignment. Genome Informatics 5, 90-99 (1994). [GIW94O10]

Jerome Gracy, Jean Sallantin ; Multiple sequence alignment using anchor points through generalized dynamic programming. Genome Informatics 5, 100-109 (1994). [GIW94O11]

Ishikawa, M., Toya, T., Totoki, Y. and Tanaka, R.; Multiple RNA-sequence alignment considering stem regions. Genome Informatics 5, 110-119 (1994). [GIW94O12]

Matsuda, H., Yamashita, H. and Kaneda, Y.; Molecular phylogenetic analysis using both DNA and amino acid sequence data and its parallelization. Genome Informatics 5, 120-129 (1994). [GIW94O13]

Mizuno, M. and Kanehisa, M.; Distribution of base composition around the splice sites in different species. Genome Informatics 5, 130-137 (1994). [GIW94O14]

Itoh, T., Yano, M., Takemoto, K., Akiyama, Y. and Mori, H.; Construction and analysis of Escherichia coli genome database. Genome Informatics 5, 138-139 (1994). [GIW94P01]

Kitakami, H., Tateno, Y. and Gojobori, T.; YAYOI: Taxonomy database system over international computer networks. Genome Informatics 5, 140-141 (1994). [GIW94P02]

Mizushima, H. and Hayashi, K.; Establishment of transcription factor database and human mutation database. Genome Informatics 5, 142-143 (1994). [GIW94P03]

Suzuki, K., Goto, S., Akiyama, Y. and Kanehisa, M.; A signal transduction database. Genome Informatics 5, 144-145 (1994). [GIW94P04]

Miyajima, N., Nakayama, S., Kohara, M. and Hayashi, S.; The gene network: development of a database system showing the relationships among the genes of all species. Genome Informatics 5, 146-147 (1994). [GIW94P05]

Shimizu, T. and Nakai, K.; Construction of a membrane protein database and an evaluation of several prediction methods of transmembrane segments. Genome Informatics 5, 148-149 (1994). [GIW94P06]

Suwa, M., Hirokawa, T. and Mitaku, S.; The prediction of lateral and rotational positioning of alpha-helices in a membrane protein. Genome Informatics 5, 150-151 (1994). [GIW94P07]

Shimada, A., Takehara, H. and Toma, K.; Protein three dimensional structure prediction on object oriented database. Genome Informatics 5, 152-153 (1994). [GIW94P08]

Satou, K., Furuichi, E., Hashimoto, S., Tsukamoto, Y., Kuhara, S., Takagi, T. and Ushijima, K.; Computing closures of indirect similarity relationships among structures in proteins. Genome Informatics 5, 154-155 (1994). [GIW94P09]

Asai, K., Onizuka, K., Akahoshi, M., Tanaka, H. and Itou, K.; Automatic labeling of protein structures by hidden Markov models. Genome Informatics 5, 156-157 (1994). [GIW94P10]

Hiroshi Mamitsuka, H.; A new method for predicting long-range interactions between amino acid residues based-on homological correlations. Genome Informatics 5, 158-159 (1994). [GIW94P11]

Hishigaki, H. and Yasukawa, T.; Reverse evolution of proteases studied by a modified 3D-1D method. Genome Informatics 5, 160-161 (1994). [GIW94P12]

Kato, H. and Takahashi, Y.; An approach to three-dimensional motif finding in proteins. Genome Informatics 5, 162-163 (1994). [GIW94P13]

Kamimura, M. and Takahashi, Y.; Discriminative analysis of the conformational patterns of protein amino acid residues. Genome Informatics 5, 164-166 (1994). [GIW94P14]

Kotoko Nakata, K.; Protein secondary structure analysis using neural network. Genome Informatics 5, 166-167 (1994). [GIW94P15]

Ishikawa, T., Mitaku, S., Terano, T., Hirokawa, T., Suwa, M. and Seah Boon Chieng ; Finding functional features of proteins using machine learning techniques. Genome Informatics 5, 168-169 (1994). [GIW94P16]

Nakai, K., Shinohara, A. and Miyano, S.; Assignment of certainty-factor parameters with a given reasoning tree for the prediction of protein localization sites. Genome Informatics 5, 170-171 (1994). [GIW94P17]

Nakashima, H. and Nishikawa, K.; Discrimination of intracellular and extracellular proteins by single residue and residue-pair scores. Genome Informatics 5, 172-173 (1994). [GIW94P18]

Eguchi, Y. and Ueda, Y.; Classification of possible proteins from genome sequencing. Genome Informatics 5, 174-175 (1994). [GIW94P19]

Nakakuni, H., Okazaki, T. and Miyano, S.; Alphabet indexing by cluster analysis: a method for knowledge acquisition from amino acid sequences. Genome Informatics 5, 176-177 (1994). [GIW94P20]

Yada, T., Ishikawa, M., Tanaka, H. and Asai. K.; DNA sequence analysis using hidden Markov model and genetic algorithm. Genome Informatics 5, 178-179 (1994). [GIW94P21]

Suyama, M., Nishioka, T. and Oda, J.; Detecting common amino acid sequence patterns with a gap. Genome Informatics 5, 180-181 (1994). [GIW94P22]

Gotoh, O.; Multiple sequence alignment with a tree-based weighting syste. Genome Informatics 5, 182-183 (1994). [GIW94P23]

Tanaka, H., Fengrong Ren, Fukuda, N.; Integration of minimum evolution and maximum likelihood method in constructing molecular evolutionary tree. Genome Informatics 5, 184-185 (1994). [GIW94P24]

Kanaya, S., Ikemura, T. and Kudo, Y.; Relationship between gene function and codon usage in Escherichia coli on the basis of principal component analysis. Genome Informatics 5, 186-187 (1994). [GIW94P25]

Nakamura, Y., Fukagawa, T., Sugaya, K. and Ikemura, T.; Estimation of protein--production levels for ORFs found by E. coli and yeast genome projects, basing on levels of ``optimal codon'' usage, in connection with feasibility of their protein coding ability and with assignment to foreign-type genes. Genome Informatics 5, 188-189 (1994). [GIW94P26]

Sasanuma, M., Zhong-qing Wang, Shibata, K., Sasanuma, S., Ozawa, M., Kohriki, E., Eki, T., Sarai, A., Sugawara, H. and Murakami, Y.; A set of tools developed for the analysis of open reading frames of yeast (S.cerevisiae) chromosome VI. Genome Informatics 5, 190-191 (1994). [GIW94P27]

Zhong-qing Wang, Murakami, Y., Eki, T., Oyama, A., Eguchi, Y., Sarai, A. and Sugawara, H.; Evaluation of the sequence data assemble software "Shotgun". Genome Informatics 5, 192-193 (1994). [GIW94P28]

Nishikawa, T., Hiraoka, S., Kasahara, N. and Nagai, K.; Rapid identity searching program for DNA sequences and its applications to cDNA grouping. Genome Informatics 5, 194-195 (1994). [GIW94P29]

Minoshima, S. and Shimizu, N.; Locus-in v.2 and GeneView^{PLUS}: Computer softwares for entry and analysis of the human genome data. Genome Informatics 5, 196-197 (1994). [GIW94W01]

Suyama, A., Ohyama, A., Hagiya, M., Furuhata, Y., Ito, T., Fujiyama, A., Hattori, M., Sakaki, Y. and Takagi, T.; ContigMaker and SAND: software tools for genome mapping and sequencing. Genome Informatics 5, 198-199 (1994). [GIW94W02]

Niiyama, T., Takeuchi, A., Kotani, K., Uchiyama, I., Ogiwara, A. and Nakai, K.; Gnome: Recent developments. Genome Informatics 5, 200-201 (1994). [GIW94W03]

Akiyama, Y., Yakoh, T., Mori, H. and Ogasawara, N.; A server-client version of ``Genomatica'' integrated genome information browser. Genome Informatics 5, 202-203 (1994). [GIW94W04]

Goto, S., Kuhara, S., Takagi, T. and Kanehisa, M.; Extension of the integrated database ``HyperGenome'' for genome maps and sequence information. Genome Informatics 5, 204-205 (1994). [GIW94W05]

Ogiwara, A., Uchiyama, I., Takagi, T. and Kanehisa, M.; Further improvements on SMART: sequence motif analysis and retrieval tool. Genome Informatics 5, 206-207 (1994). [GIW94W06]

Kitano, K., Ogiwara, A. and Takagi, T.; Gidre: Genome integrated databases retrieval environment. Genome Informatics 5, 208-209 (1994). [GIW94W07]

Dohi, H. and Sugawara, H.; GenomeCruiser: A laboratory notebook for human gene mapping. Genome Informatics 5, 210-211 (1994). [GIW94W08]

Ohyama, A., Takazawa, M., Kubota, A. and Miyajima, N.; A DNA sequencing project monitoring and sequence data quality control system. Genome Informatics 5, 212-213 (1994). [GIW94W09]

Wada, Y., Inoue, K. and Yasu, H.; Animal genome database for network users. Genome Informatics 5, 214-215 (1994). [GIW94W10]

Yasunaga, T., Takagi, T., Tokimori, T., Kotani, K., Takeuchi, A. and Niiyama, T.; Menu system based on NCSA mosaic and programs forked from the menu. Genome Informatics 5, 216-217 (1994). [GIW94W11]

Suzuki, H. and Katoh, H.; An attempt to integrate various protein databases using an object-oriented database management system. Genome Informatics 5, 218-219 (1994). [GIW94W12]

Oda, A., Yano, J. and Kanehisa, M.; A DNA/protein sequence retrieval system: an Xtpanel application. Genome Informatics 5, 220-221 (1994). [GIW94W13]

Hiraoka, S. and Nagai, K.; Rapid similarity search algorithm of nucleic acid database. Genome Informatics 5, 222-223 (1994). [GIW94W14]

Akutsu, T. and Hyakutake, T.; Enhancement of the ``PROTEIX'' database system for three-dimensional protein structures. Genome Informatics 5, 224-225 (1994). [GIW94W15]

Hirokawa, T., Seah Boon Chieng, Suwa, M. and Mitaku, S.; A computer system for predicting membrane protein structure. Genome Informatics 5, 226-227 (1994). [GIW94W16]

Shoudai, T., Uchida, T., Miyano, S., Shinohara, A., Shimozono, S., Okazaki, T., Shinohara, T., Kuhara, S. and Arikawa, S.; BONSAI Garden: parallel machine discovery system for sequences. Genome Informatics 5, 228-229 (1994). [GIW94W17]

Arita, M., Hagiya, M. and Shiratori, T.; SIMFLY: The simulation of a fly embryo. Genome Informatics 5, 230-231 (1994). [GIW94W18]

Tanaka, H., Hirosawa, M., Tanaka, R., Akahoshi, M. and Ishikawa, M.; A knowledge base of biological cascades. Genome Informatics 5, 232-233 (1994). [GIW94W19]

Goto, S. and Kanehisa, M.; A knowledge base for searching and browsing metabolic pathways. Genome Informatics 5, 234-235 (1994). [GIW94W20]