Akutsu, T.; On pattern matching methods for three dimensional protein structures. Genome Informatics 4, 1-9 (1993). [GIW93O01]

Hirosawa, M,. Tanaka, R. and Ishikawa, M.; Motif knowledge base based on deductive object-oriented database language. Genome Informatics 4, 10-16 (1993). [GIW93O02]

Matsuda, H.; Efficient query processing on genomic database using data-parallel logic programming language. Genome Informatics 4, 17-24 (1993). [GIW93O03]

Satou, K., Furuichi, E., Kuhara, S. and Takagi, T.; Searches for topologically and three dimensionally similar structures in proteins. Genome Informatics 4, 25-35 (1993). [GIW93O04]

Sakakibara, Y., Michael Brown, Rebecca C. Underwood, Saira Mian, David Haussler.; Stochastic context-free grammars in computational biology: applications to modeling RNA. Genome Informatics 4, 36-45 (1993). [GIW93O05]

Mamitsuka, H.; Representing inter-residue dependencies in protein sequences with probabilistic networks. Genome Informatics 4, 46-55 (1993). [GIW93O06]

Fujiwara, Y. and Konagaya, A.; Protein motif extraction using hidden Markov model. Genome Informatics 4, 56-64 (1993). [GIW93O07]

Hagiya, M.; A deductive method for construction and visualization of contigs in the STS strategy. Genome Informatics 4, 65-73 (1993). [GIW93O08]

Shinohara, A., Shimozono, S., Uchida, T., Miyano, S., Kuhara, S. and Arikawa, S.; Running learning systems in parallel for machine discovery from sequences. Genome Informatics 4, 74-83 (1993). [GIW93O09]

Ishikawa, M., Toya, T., Totoki, Y. and Konagaya, A.; Parallel iterative aligner with genetic algorithm. Genome Informatics 4, 84-93 (1993). [GIW93O10]

Araki, S., Goshima, M., Mori, S., Nakashima, H., Tomita, S., Akiyama, Y. and Kanehisa, M.; Application of parallelized DP and A* algorithm to multiple sequence alignment. Genome Informatics 4, 94-102 (1993). [GIW93O11]

Ukiyama, N. and Imai, H.; Parallel multiple alignments and their implementation on CM5. Genome Informatics 4, 103-108 (1993). [GIW93O12]

Gotoh, O.; Extraction of conserved or variable regions from a multiple sequence alignment. Genome Informatics 4, 109-113 (1993). [GIW93O13]

Seto, Y., Ikeuchi, Y. and Isoyama, M.; Automatic extraction of motif candidates by pairwise sequence alignment. Genome Informatics 4, 114-119 (1993). [GIW93O14]

Shibayama, G. and Imai, H.; Finding K-best alignments of multiple sequences. Genome Informatics 4, 120-129 (1993). [GIW93O15]

Asai, K., Tanaka, H., Itou, K. and Onizuka, K.; Are the hidden Markov models promising in protein research? Genome Informatics 4, 130-139 (1993). [GIW93O16]

Onizuka, K., Asai, K. and Ishikawa, M.; Protein 3D structure prediction based on multi-level description. Genome Informatics 4, 140-151 (1993). [GIW93O17]

Saito, N. and Ota, M.; Prediction of structure of globular proteins II. tertiary structure. Genome Informatics 4, 152-156 (1993). [GIW93O18]

Suwa, M., Hirokawa, T. and Mitaku, S.; A theoretical method for the determination of helix configuration in membrane proteins. Genome Informatics 4, 157-166 (1993). [GIW93O19]

Ohkubo, Z. and Kanehisa, M.; A method for extracting spatially close peptide segments in proteins. Genome Informatics 4, 167-174 (1993). [GIW93O20]

Iida, Y.and Masuda, T.; Quantification analysis of translation initiation signal sequences in vertebrate mRNAs. Genome Informatics 4, 175-182 (1993). [GIW93P01]

Tajima, K.; Multiple sequence alignment using parallel genetic algorithms. Genome Informatics 4, 183-187 (1993). [GIW93P02]

Yoshizawa, T., Fumoto, M. and Yasukawa, T.; Prediction of protein conformations by a spin glass model (I). Genome Informatics 4, 188-196 (1993). [GIW93P03]

Sasagawa, F. and Tajima, K.; Toward prediction of multi-states secondary structures of protein by neural network. Genome Informatics 4, 197-204 (1993). [GIW93P04]

Nakata, K.; Sequence analysis of zinc finger DNA-binding protein. Genome Informatics 4, 205-210 (1993). [GIW93P05]

Iida, K. and Mamitsuka, H.; Protein sequence motif extraction with a probabilistic logic neural network: motif evaluation on a 3-D structure. Genome Informatics 4, 211-218 (1993). [GIW93P06]

Niijima, K. and Shimozono, S.; Learning algorithms of three layered neural networks for sequence classification. Genome Informatics 4, 219-223 (1993). [GIW93P07]

Tanaka, H., Onizuka, K. and Asai, K.; Classification of proteins via successive state splitting algorithm of hidden Markov network. Genome Informatics 4, 224-230 (1993). [GIW93P08]

Kanaya, S. and Kudo, Y.; Assessment of species-specific codon usage by principal component analysis. Genome Informatics 4, 231-238 (1993). [GIW93P09]

Kusuda, J., Hirata, M., Toyoda, A., Takahashi, I. and Hashimoto, K.; A search for CpG islands associated with genes in human genomic sequences compiled in the DNA database. Genome Informatics 4, 239-244 (1993). [GIW93P10]

Suyama, M., Nishioka, T. and Oda, J.; Extraciton of the ligand-related motifs in enzymes. Genome Informatics 4, 245-254 (1993). [GIW93P11]

Uchiyama, I., Ogiwara, A., Ohkubo, Z. and Kanehisa, M.; Automatic procedure to extract signature pentapeptides from the protein sequence database. Genome Informatics 4, 255-263 (1993). [GIW93P12]

Nagai, K., Nishikawa, T., Kambara, H. and Takagi, T.; A simple method for finding local sequence similarities. Genome Informatics 4, 264-269 (1993). [GIW93P13]

Ogata, H., Akiyama, Y., Kanehisa, M.; A computer modeling method for the three-dimensional structure of RNA. Genome Informatics 4, 270-274 (1993). [GIW93P14]

Fujibuchi, W. and Kanehisa, M.; Construction of a functional word dictionary for primate promoter sequences. Genome Informatics 4, 275-282 (1993). [GIW93P15]

Yokomori, T. and Kobayashi, S.; A similarity measure for DNA sequence analysis based on locality. Genome Informatics 4, 283-292 (1993). [GIW93P16]

Kobayashi, Y. and Saito, N.; Prediction of structures of globular proteins I. secondary structure. Genome Informatics 4, 293-299 (1993). [GIW93P17]

Sirajuddin, K., Tomomasa Nagashima, T. and Ono, K.; Variation of the order of importance in the base position for 5'-splice site sequences. Genome Informatics 4, 300-305 (1993). [GIW93P18]

Furutani, H.; Analysis of abnormal splicing by neural network. Genome Informatics 4, 306-314 (1993). [GIW93P19]

Kamimura, M. and Takahashi, Y.; Backbone conformational pattern clustering of three-dimensional peptide fragments of proteins. Genome Informatics 4, 315-324 (1993). [GIW93P20]

Ohnishi, K.; Poly-tRNA theory on the origin and evolution of mRNA and genetic codes: evolution from tandem tRNA-repeats to primitive mRNAs encoding F0-ATPase a subunit and glycyl-tRNA synthetase. Genome Informatics 4, 325-331 (1993). [GIW93P21]

Sakai, T.; Metrics for protein sequence comparison. Genome Informatics 4, 332-338 (1993). [GIW93P22]

Ishikawa, T. and Terano, T.; Using analogical reasoning to predict a protein structure. Genome Informatics 4, 339-346 (1993). [GIW93P23]

Wada, K., Wada, Y., Tanaka, S., Doi, H., Nakamura, Y., Sugaya, K., Fukagawa, T. and Ikemura, T.; A sensitive and efficient homology search method to find protein-coding regions using "protein-coding region DNA database". Genome Informatics 4, 347-351 (1993). [GIW93P24]

Goto, S., Sakamoto, N. and Takagi, T.; Integration of genome databases using a deductive object-oriented database. Genome Informatics 4, 352-361 (1993). [GIW93W01]

Suzuki, T., Nakashima, S., Takagi, T., Kuhara, S. and Kanehisa, M.; Enhancement of the integrated database "HyperGenome" for genome maps and sequence information. Genome Informatics 4, 362-369 (1993). [GIW93W02]

Minoshima, S. and Shimizu, N.; Locus-in: A new database system with graphical front end to integrate mapping data. Genome Informatics 4, 370-375 (1993). [GIW93W03]

Suyama, A., Hagiya, M., Ito, T., Fujiyama, A., Ohyama, A. and Takagi, T.; ContigMaker: software tool for contig map construction. Genome Informatics 4, 376-384 (1993). [GIW93W04]

Niiyama, T., Tokimori, T., Ogiwara, A., Uchiyama, I. and Nakai, K.; GNOME: A sequence data management tool to access homology, motif, and other data analysis servers. Genome Informatics 4, 385-393 (1993). [GIW93W05]

Akiyama, Y., Mori, H., Kuhara,S., Ogasawara, N., Miyajima, N., Furukawa,T., Sato, K. and Murakami, Y.; Genomatica: An integrated data management and analysis tool for genome sequencing projects. Genome Informatics 4, 394-401 (1993). [GIW93W06]

Ogiwara, A., Uchiyama, I. and Kanehisa, M.; Sequence Motif Analysis and Retrieval Tool. Genome Informatics 4, 402-410 (1993). [GIW93W07]

Hirosawa,M., Totoki, Y. and Ishikawa, M.; Constraint based alignment editor with automatic alinger and motif dictionary retriever. Genome Informatics 4, 411-417 (1993). [GIW93W08]

Akahoshi, M., Onizuka, K., Ishikawa, M. and Asai, K.; A three-dimensional graphic system for protein structure analysis. Genome Informatics 4, 418-429 (1993). [GIW93W09]

Akutsu, T.; PROTEIX: An interactive database system for three dimensional protein structures. Genome Informatics 4, 430-433 (1993). [GIW93W10]

Hirokawa, T., Suwa, M. and Mitaku, S.; A computer system for predicting membrane protein structure. Genome Informatics 4, 434-440 (1993). [GIW93W11]

Ikeuchi, Y., Isoyama, M. and Seto, Y.; Knowledge library of proteins on anonymous FTP / genome network. Genome Informatics 4, 441-445 (1993). [GIW93W12]

Mizushima, H. and Kuchino, Y.; Development of a genetic information system for institute engaged in molecular biology. Genome Informatics 4, 446-450 (1993). [GIW93W13]

Fujiyama, A.; Human gene database for a personal computer with graphical interface. Genome Informatics 4, 451-454 (1993). [GIW93W14]