Genome Informatics Workshop III

December 14-15, 1992
Pacific Convention Plaza, Yokohama, Japan

Published as: Mitaku, S., Takagi, T., Kanehisa, M., Goto, O., Nitta, K., Hagiya, M., Yonezawa, A. and Kataoka, R. (eds.); "Proceedings of Genome Informatics Workshop III" (In Japanese)


INVITED LECTURES

Akinori Yonezawa: "'Massively' Parallel Computing and Genome Information Processing"

Yusuke Nakamura: "Medical Application of the Human Genome Project"

Jim Ostell: "New Databases and Software Tools for Molecular Biology at the National Center for Biotechnology Information"

Setsuo Arikawa: "Algorithmic Learning Theory and Motif Discovery"

ORAL SESSION A

[GIW92OA1] Hiroshi Mizushima and Yoshiyuki Kuchino: "Integration of Local Area Network System in National Cancer Center, and Study for Network-aided Genetic Information Analysis System"

[GIW92OA2] Hajime Kitakami, Yukiko Yamazaki, Yoshio Ugawa, Kazuo Ikeo, Naruya Saitou, Yoshio Tateno, Takashi Gojobori: "Building and Searching DNA Data Base on a Relational Model"

[GIW92OA3] Toshimichi Ikernura, Kimihiko Sugaya, Ken-nosuke Wada: "Compartmentalization of the Human Genome"

[GIW92OA4] Shigehiko Kanaya, Yoshihiro Kudo: "Assessment of Lysogenisity of Temperate Phages: Comparison of Repressibility of Promoter-like Sequneces among Escherichia coli and its Phages (P4 andlambda)"

[GIW92OA5] Yoichi Iida: "Quantification Analysis of Translation Initiation Signal Sequences in Vertebrate mRNAs"

[GIW92OA6] Koji Ohnisi: "Evolution from Semi-tRNA to tRNAs, rRNAs, snRNA and Primitive mRNAs"

[GIW92OA7] Yoshisato Takeda, Kenji Yamamoto, Masahiro Yasugi, Akinori Yonezawa: "RNA Secondary Structure Prediction Using a Highly Parallel Computer"

[GIW92OA8] Kenta Nakai, Yutaka Akiyama, Hiroshi Sakamoto: "Does an Aberrant Splicing Database Imply Rules for Splice Site Selection?"

ORAL SESSION B

[GIW92OB1] Koji Hakata and Hiroshi Imai: "Algorithms for the Longest Common Subsequence Problem"

[GIW92OB2] Minoru Icchoda, Nobuo Takiguchi, Yoshiyuki Kotani: "Expressing a Set of Strings for Genome Information and DP Matching"

[GIW92OB3] Timothy Burcham, James Candlin, Alan Roter: "Sequence Analysis and Assembly Using the Fast Data Finder (TM) 3"

[GIW92OB4] Makoto Hirosawa, Masato Ishikawa, Masaki Hoshida: "A Tiny Step toward Rule-based Protein Sequence Analysis System"

[GIW92OB5] Satoru Miyano, Ayumi Shinohara, Setsuo Arikawa, Shinichi Shimozono, Takeshi Shinohara, Satoru Kuhara: "Knowledge Acquisition from Amino Acid Sequences by Decision Trees and Indexing"

ORAL SESSION C

[GIW92OC1] Y. Seto, Y. Ikeuchi, S. Kawakita, K. Nishikawa, M. Kanehisa: "Trial to Determine Identity of Proteins by Motifs"

[GIW92OC2] Yukihiro Eguchi, Yasuhiko Seto: "Prediction of the Functional Sites in Amino Acid Sequences"

[GIW92OC3] Yo Matsuo, Ken Nishikawa: "Recognition of Weak Homology of Proteins Using Information from 3D-structures"

[GIW92OC4] Mark B. Swindells: "Automatic Determination of Hydrophobic Cores"

[GIW92OC5] Fumiyoshi Sasagawa, Koji Tajima: "An Exploration of Using a Modular Neural Network to Predict the Secondary Structures through a Variation in the Description of the Output States"

[GIW92OC6] Hiroshi Mamitsuka, Kenji Yamanishi: "Protein aipha-Helix Region Prediction Using Stochastic-Rule Learning"

[GIW92OC7] Kiyoshi Asai, Satoru Hayamizu, Kentaro Onizuka, Ken-ichi Handa: "Continuous Speech Recognition Techniques for Protein Structure Prediction Systems"

[GIW92OC8] Yasuo Yonezawa: "An Algorithm for Extraction of Secondary Structure from Imperfect Protein Tertiary Structure Data"

ORAL SESSION D

[GIW92OD1] Kenji Satou, Satoru Kuhara, Emiko Furuichi, Kyoko Takiguchi, Toshihisa Takagi: "Similar Structure Search Function of PACADE for Analyzing Three Dimensional Structures of Protein"

[GIW92OD2] Seiichi Aikawa, Mayumi Tomikawa, Fumiko Matsuzawa: "A Protein Tertiary Structure Search System

[GIW92OD3] Kentaro Onizuka, Kiyoshi Asai, Stephen T. C. Wong: "The Classification of Local Structures for Modeling Protein Structure Geometric Constraints"

[GIW92OD4] Kouji Tabuchi, Tamio Yasukawa, Masaki Fumoto: "Development of the Protein Tertiary Structure Prediction System III: Simulation of Folding Process of Lysozyme"

[GIW92OD5] Eiichi Soeda, De-Xing Hou, Tetsusi Yamagata, Haruo Kishida, Takanori Shimokawa, Hiroshi Furuhashi, Emiko Soeda, Yasuo Atsuchi: "Ordering and Mapping of Cosmid Clones under Semi-automated System"

POSTER SESSION

[GIW92P01] Yoshio Noguchi: "Data Analysis of Chromosome-Profiles"

[GIW92P02] Hirokuni Takano, Takashi Kohno, Hiroaki Shimizu, Ryuya Shimoda, Naohito Yamaguchi, Jun Yokota: "Physical Mapping of Commonly Deleted Region on Chromosome 3p in Human Cancers Based on Radiation Hybrid (RH) Mapping"

[GIW92P03] De-Xing Hou, Toshitugu Okayama, Takurou Tamura, Eiichi Soeda: "A Rapid Mapping System for Assigning Cosmid Clones to Human Chromosome 21 by Dot Analysis"

[GIW92P04] Christophe Lefevre: "Drawing Dot-matrix Similarity Plots with the Sequence Position Tree"

[GIW92P05] Wataru Fujibuchi, Minoru Kanehisa: "Integrated Characterization of Transcriptional Upstream Sequences by Statistical Consensus Patterns and Experimental Data"

[GIW92P06] Takashi Kunisawa: "Evolutionary Origin for the Multiplicity of Escherichia coli Response-Regulator Proteins"

[GIW92P07] Y. Ikeuchi, M. Isoyama, Y. Seto: "Anonymous FTP Prepared by PRF on Genome Network"

[GIW92P08] Yoshinari Watanabe, Shuji Kaneko, Ichiro Sora, Hiroyuki Hayashi, Naohiro Hohashi, Kei Hosokawa, Shigeo Masaki: "Bio-Net; A Tool to Support Genome Researchers"

[GIW92P09] Kenji Yamamoto, EIji Arakawa, Hiroshi Yoshikura: "Free Energy Calculation of Random Sequence of RNA"

[GIW92P10] Motokazu Kamimura, Hiroaki Kato, Yoshimasa Takahashi: "Higher Information Processing of Protein AMino Acid Sequence Data: Development of A Computer System for the Analysis of Environmental Features of Protein's Amino Acid Sequence"

[GIW92P11] Zenmei Ohkubo, Minoru Kanehisa: "A New Method for Finding Packing Patterns of Protein C alpha Segments"

[GIW92P12] Makiko Suwa, Shigeki Mitaku, Nobuhiko Saito: "The Molecular Modeling of Membrane Protein by Enerrgy Calculation"

[GIW92P13] Takeshi Fukuhara, Haretsugu Hishigaki, Tamio Yasukawa: "Three Dimensional Structures and Molecular Evolutions of Proteins I. The Ongin of Serine Proteases"

[GIW92P14] Koichi Niijima, Takeshi Shinohara, Yoshihiro Mizoguchi, Shinichi Shimozono: "Learning of Three-Layered Neural Networks by the Contraction Mapping Principle: Application to Genome Data Analysis"

[GIW92P15] Yoshiteru Ishida: "Self-Operation Models and Self-Reproductive Strand"

[GIW92P16] Masahiko Mizuno, Minoru Kanehisa: "The Distribution Profiles of GC Content Surrounding the Translation Initiation Site in Different Species"

[GIW92P17] Yuzuru Husimi, Makoto Marutani: "Towards an Analysis of Mutants Spectra on the Sequence Space II"

WORKSTATION SESSION

[GIW92W01] Atsushi Ogiwara, Ikuo Uchiyama, Yutaka Akiyama, Minoru Kanehisa: " Introduction to the GenomeNet"

[GIW92W02] Yutaka Akiyama, Hirotada Mori, Satoru Kuhara, Tetsuya Furukawa, Kenji Satou, Nobuyuki Miyajima, Naoki Ogasawara, Yasufumi Murakami: "Genomatica: An Integrated Management Tool for Genome Sequencing Projects"

[GIW92W03] Yutaka Akiyama, Minoru Kanehisa: "NeuroFold: An RNA Secondary Structure Prediction System Using a Hopfield Neural Network"

[GIW92W04] Mikita Suyama, Atsushi Ogiwara, Takaaki Nishioka and Jun'ichi Oda: "Construction and Application of a Relational Dattbase That Links Amimo Acid Sequence Motifs to Chemical Compounds"

[GIW92W05] Takatsugu Hirokawa, Takaharu Saito, Nobuhiro Kimura, Makiko Suwa, Shigeki Mitaku: "A Computer System for Predicting Membrane Protein Structure"

[GIW92W06] Akira Suyama, Hiroaki Kaku: "G Shell (gsh): Flexible and Extensible Environment for Genome Information Analysis

[GIW92W07] Masami Hagiya: "Emacs Interface for Sybase"

[GIW92W08] Shinsei Minoshima, Hiroshi Hohi, Mitsuru Ishizuka, and Nobuyoshi Shimizu: "GeneView: A Human Genome Mapping Library System on the Workstation"

[GIW92W09] Satoru Kuhara, Toshihisa Takagi, Minoru Kanehisa: "HyperGenome: An Integrated System for Mapping Data

[GIW92W10] Susumu Goto, Norihiro Sakamoto, Toshihisa Takagi: "Object-Oriented Database with Logical Query Interface for Genomic Computation"

[GIW92W11] Yoshihiro Ugawa, Hajime Kitakami, Yukiko Yamazaki, Kazuho Ikeo, Mari Saito, Masashi Uchino, Toshiya Sakamaki, Shigeru Kanemoto, Nobuyuki Fujita, Masataka Takekoshi, Shuji Kaneko, Hideya Yoshida, Hiro Amano, Yasuo Ina, Naruya Saito, Takashi Gojobori, Yoshio Tateno: "Network Servers of DNA Data Bank of Japan (DDBJ)

[GIW92W12] Asao Fujiyama: "Human Genome Mapping Database for Macintosh"

[GIW92W13] Masahiko Suzuki, Mika Hirakawa: "Demonstration of GDB: GDB (Genome Data Base) The International Human Genome Data Base"

[GIW92W14] Naohiro Hohashi, Shuji Kaneko, Ichiro Sora, Hiroyuki Hayashi, Kei Hosokawa, Shigeo Masaki, Yoshinari Watanabe: "Guidance of Access to Bio-Net Hosted on the NIFTY-Serve Network and Demonstration of On-line Softwares to Aid a Genome Research

[GIW92W15] Tatsuya Shiobara, Kosei Shimokomaki, Chinatsu Nakanishi: "Motif Database Handling System BIORESEACH/PR"

[GIW92W16] Kotoko Nakata, Toru Yoshino, Yasushi Kubota, Akinori Sarai: "Sequence Analysis of Human Genome: Prediction of Protein Coding Region in DNA Sequences"

[GIW92W17] Takeshi Shinohara, Shuichi Fukumachi: "Speed-up of Information Retrieval by Data Compression"

[GIW92W18] Ayumi Shinohara, Satoru Miyano, Setsuo Arikawa, Shinichi Shimozono, Takeshi Shinohara, Satoru Kuhara: "BONSAI: Knowlege Acquisition System by Decision Trees over Regular Patterns"

[GIW92W19] Koichi Yamagishi, Michiyo Yano, Akihiko Konagaya: "A Protein Sequence Alignment Editor based on KANAE"

[GIW92W20] Masato Ishikawa, Masaki Hoshida, Makoto Hirosawa, Tomoyuki Toya, Yasushi Totoki: "Protein Sequence Alignment by Parallel Iterative Method"